ViewGene
Locus Name:
GeneID:
Location:

GeneID:6173
TrivialName: PA14_27670
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27670
PAO1 Ortholog Locus:
Sequence Length:2847
Protein Length:948
Start: 2400759
Stop: 2397913
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN62218.1|AF440524_5 (AF440524) hypothetical protein [Pseudomonas aeruginosa]
Identities = 707/713 (99%), Positives = 709/713 (99%)
Sequence:
TTGATCCCAGGAGTGCCCAGACATGTTCGGCTTCGGCAAGAAATCCGCGCCCGCGCCCGCGCCATCCGGCGA
CAGCGAGCAAGCCGCCGCCCCCGGCGAGGCCGGCCGGCAGACGCCAGCCAGCGGCGGCAGGGCGTCCGCCAA
CGGCGACGTGAAGCTGCCGTCGCGCCCTTCGCCGCTGGCCGGCATGAGCGAGCGCCTGCTCAAGCAGACCGA
GGCGCCGCCGCCGGACACCAGCGCCCTGAACAGTCAAGTCGTGCAGGCGGTGCAGATGAGCAACAGCGAAAC
CGCCGGCTATGCGCCGTCGCAGATCGCCATCGCGCCGAACATGATGATCAGCCAGGCCTCCGGGCTGGTGGC
GCAATCCGCCGCCAGCTACTTCGACGGAGTCAGCAAGATCGCCCTGGCCAGCCAGGCGATCCTGCTCCGGCA
GATGACCCAGAACATCGCCGAAAACAAGCTGGCCCAGGCTGCCGAGGACGCGCTCGGCGCCCTCGCCACCGA
CCTGCTGATGGGCGCCGCCGCCGCGGTAGCCGCGGCGGCCGGGGCGATCGAGGCGGAATCGGCCAGCTTCGC
CATCGACAAGATCGACCAGAGCATCGCCAAGTACAGCGAGACCCTCGCCAGTCGCGGCGGCAAGGACACCCA
ATCGTAGCCACCACCGGCGGGGCCGGCGGCGTCCGGCCCTGGCACAGGAGAGCCGTCATGGCCTATTTCAAG
CTGGAAGAACCGGTCAGGTTCCATCGCTATCCCTTCGACTTCCATAGTCACTTCGCCGGCATCCTGCCGGTG
GAAAGCAACAGCCGCTGGACGCGCGACCGCCGGGTCTTCCGCGTCGGCGAGCGGCAAGTGAGCCTGGAGAAA
GGCCAGGAGCTTTCCCTGATCGGGCTGCTGATGAGTGCCCGCGGCGTCGCCCCGGACGTCGACGGCAAGGCG
CTGGAGGAGGCTCGCCAGGCCGCGCACTATGAGCTGTTCGAACTGGCTCTGCAGCGGATGGTCAGGCGCAAT
CCGTTCGCCGCGACCGACCGTCAGGGCTACCTGCGCGGCGAATGCGCGGCGGAGAACATCTATCTCGCCTGC
CTCATCCTGGCGCAACGTTTTGGCCGGACCTCGCCGCCAGCGGCCATCGACCAGCCAGCGATCTACCTCGGC
ACCCTGGAACTGCTCGGTGCGAGCGCGGTTCGCGACAGCGAGACGGACCAGTTCGTCCGCTACTTCAACCGC
AAGATCTGGAGCGGCAACAAGTACACGCCGTTCGACGACGCCTACTGGGCCCGCGGCGCCATCCGCGATCGC
CATCCGGGCGAATTCGCCTGCCTGACGCTGGGGTTCCTCCTCCACGAAGGAATCAGCCATACCCAGACGGCG
ACGGGGGAAGACGAGGTGGCCGTCCTCGATTCCCTGTTCGAACAATTCAACGCCTCCGAGAAGACCGCCTAC
CGCCTGCTCGCCCACACCGCGCATGGCTATGCCAGCGAAGCCGCCTTCGATGCCGAGCTGCACAGGATCCTC
CGTCATTTCGAAATACAGCAGGGGCAGCCACCGCAGGCCCGGCTGGTCGGCATCGACCTGCTCGGCATGGAG
ACCGCTACCGGCCTGTACCGACAGTTCTTCGACTTCCTCCTCGGACAGGCCGCGGTGTTTCGCCACTACCTG
GACGGCAAGCCGGAAACCCGCAAGATGGTCCTGCACATCCATTGTGGAGAGGGGACCGGGGTGTCCGACGAC
AACCGGTCGCTGTGCGGTTACTTCCTGCGCAACGCCAACGCGCTGGACGATTTCTACGCAGCGCTCTCCGCC
TATGCCTGGAAGTGCTATGGCAACACCATCCGCCAGGGCAAGGCGCGGCTACGCGAACGGGAGAACCTGCAG
GAACGTGACAAGGCGCCCAGCGCCCTCGCCGGCCTTTTCGACGAACTGTTTTTCGGCAACAGCCTGACCGCC
TCCGGCCTGCGGCTACGCCGCTTCGACATCACCAGCGGGACTACCCAGGCCCTGGTCGCCTATTACGCCCGC
ACCAACGTCGTGAACCTCTGCCAGGCGCTGGCCAGCCGCGACGCCGACGGCAACAGCTACTACCGCCGCCTG
CTGGAGAGCGATCTGTTCAGCCTGCGCATCGGCCATGCCTACTACTACCGCAACTATCTGGCCAGCAAGTTC
CCCGAGCTGTGCTTCGACACCAACCTGGGAAGCAATTTCATTACCGGCGCCTCCGGCCTCTTCGACTCGCTG
CAGGAATACCGCCTGAACCGTGGCCTGCGCCATCTCGATGGATACGTCGGCACCGACCAGCTCAAGGAACTC
AGTCTGGCCATCGCCTACCAGGGCGAACAGCGCCTGGACCCACAACAGATGCAGTACGTCCATGCCCTGGCG
GAAAGCCAGAGCGGCTTCGACGAACTGGGCGAACACCTCCCGGGTACACCCGGCTGGGCGAAACCCGCGCTG
GAACAGTTCTTCGTAAGTCAGTGCGCGCTCTACCGCTCCGAGGAGGATCGCTACTTCCAGTTCGAAGCCTAC
CGGCGCCTCTTCGCCCAGGTCCTCAACTGGCGCTCCTATCTGCTGGGCGCCGACGGCCAGGGTGTCGAGCAC
TCCAACGTACAGGACGAAGCGATCCGCATGGCGCTCCTGCTCAACTATGCCGCCGCGGACCGCCACGGCCGG
GTTCCGGCCGCTTCGCTGGAGAATGCCCAACGCCTGCTGGTGCAACTGGGCAGCGCCTACTGGGAGGAAACC
ATCGGCGCCGTCGACCTGGCCGGCGCGCCCCATCGGGACCGAGAGCTGCAGCGCTTCGAAGGATTCGCCGCC
CCCGCCTCGGTCGTGCGCATCTCCACCCGCAGCAGTTGA
Translation:
MIPGVPRHVRLRQEIRARARAIRRQRASRRPRRGRPADASQRRQGVRQRRREAAVAPFAAGRHERAPAQADR
GAAAGHQRPEQSSRAGGADEQQRNRRLCAVADRHRAEHDDQPGLRAGGAIRRQLLRRSQQDRPGQPGDPAPA
DDPEHRRKQAGPGCRGRARRPRHRPADGRRRRGSRGGRGDRGGIGQLRHRQDRPEHRQVQRDPRQSRRQGHP
IVATTGGAGGVRPWHRRAVMAYFKLEEPVRFHRYPFDFHSHFAGILPVESNSRWTRDRRVFRVGERQVSLEK
GQELSLIGLLMSARGVAPDVDGKALEEARQAAHYELFELALQRMVRRNPFAATDRQGYLRGECAAENIYLAC
LILAQRFGRTSPPAAIDQPAIYLGTLELLGASAVRDSETDQFVRYFNRKIWSGNKYTPFDDAYWARGAIRDR
HPGEFACLTLGFLLHEGISHTQTATGEDEVAVLDSLFEQFNASEKTAYRLLAHTAHGYASEAAFDAELHRIL
RHFEIQQGQPPQARLVGIDLLGMETATGLYRQFFDFLLGQAAVFRHYLDGKPETRKMVLHIHCGEGTGVSDD
NRSLCGYFLRNANALDDFYAALSAYAWKCYGNTIRQGKARLRERENLQERDKAPSALAGLFDELFFGNSLTA
SGLRLRRFDITSGTTQALVAYYARTNVVNLCQALASRDADGNSYYRRLLESDLFSLRIGHAYYYRNYLASKF
PELCFDTNLGSNFITGASGLFDSLQEYRLNRGLRHLDGYVGTDQLKELSLAIAYQGEQRLDPQQMQYVHALA
ESQSGFDELGEHLPGTPGWAKPALEQFFVSQCALYRSEEDRYFQFEAYRRLFAQVLNWRSYLLGADGQGVEH
SNVQDEAIRMALLLNYAAADRHGRVPAASLENAQRLLVQLGSAYWEETIGAVDLAGAPHRDRELQRFEGFAA
PASVVRISTRSS*
AnnotationID:6174GeneID:6173
AnnotatorUID: danlee
Modification Date/Time: 2005-12-01 15:03:58
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
gi|24461649|gb|AAN62218.1|  hypothetical protein [Pseudomonas aeruginosa]
gi|24461639|gb|AAN62210.1|  hypothetical protein [Pseudomonas aeruginosa]
     Length=713
     Score = 1425 bits (3689),  Expect = 0.0
     Identities = 707/713 (99%), Positives = 709/713 (99%), Gaps = 0/713 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:
Corresponds to ORFC/SG116 of P. aeruginosa strains SG17M and Clone C strain C.


















    ReferenceID:15976




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29463




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6173
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198610
                           gb|AAN62218.1|AF440524_5
                           (AF440524) hypothetical protein [Pseudomonas aeruginosa]
                           948
                           74.57
                           74.78
                           235
                           3689.0
     

     
     
198611
                           gb|AAN62210.1|AF440523_117
                           (AF440523) hypothetical protein [Pseudomonas aeruginosa]
                           948
                           74.57
                           74.78
                           235
                           3689.0
     

     






      

          
GC ORFID: 49175How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2553168Stop: 2556014

          
Length: 2847


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
TTGATCCCAGGAGTGCCCAGACATGTTCGGCTTCGGCAAGAAATCCGCGCCCGCGCCCGCGCCATCCGGCGA 
CAGCGAGCAAGCCGCCGCCCCCGGCGAGGCCGGCCGGCAGACGCCAGCCAGCGGCGGCAGGGCGTCCGCCAA 
CGGCGACGTGAAGCTGCCGTCGCGCCCTTCGCCGCTGGCCGGCATGAGCGAGCGCCTGCTCAAGCAGACCGA 
GGCGCCGCCGCCGGACACCAGCGCCCTGAACAGTCAAGTCGTGCAGGCGGTGCAGATGAGCAACAGCGAAAC 
CGCCGGCTATGCGCCGTCGCAGATCGCCATCGCGCCGAACATGATGATCAGCCAGGCCTCCGGGCTGGTGGC 
GCAATCCGCCGCCAGCTACTTCGACGGAGTCAGCAAGATCGCCCTGGCCAGCCAGGCGATCCTGCTCCGGCA 
GATGACCCAGAACATCGCCGAAAACAAGCTGGCCCAGGCTGCCGAGGACGCGCTCGGCGCCCTCGCCACCGA 
CCTGCTGATGGGCGCCGCCGCCGCGGTAGCCGCGGCGGCCGGGGCGATCGAGGCGGAATCGGCCAGCTTCGC 
CATCGACAAGATCGACCAGAGCATCGCCAAGTACAGCGAGACCCTCGCCAGTCGCGGCGGCAAGGACACCCA 
ATCGTAGCCACCACCGGCGGGGCCGGCGGCGTCCGGCCCTGGCACAGGAGAGCCGTCATGGCCTATTTCAAG 
CTGGAAGAACCGGTCAGGTTCCATCGCTATCCCTTCGACTTCCATAGTCACTTCGCCGGCATCCTGCCGGTG 
GAAAGCAACAGCCGCTGGACGCGCGACCGCCGGGTCTTCCGCGTCGGCGAGCGGCAAGTGAGCCTGGAGAAA 
GGCCAGGAGCTTTCCCTGATCGGGCTGCTGATGAGTGCCCGCGGCGTCGCCCCGGACGTCGACGGCAAGGCG 
CTGGAGGAGGCTCGCCAGGCCGCGCACTATGAGCTGTTCGAACTGGCTCTGCAGCGGATGGTCAGGCGCAAT 
CCGTTCGCCGCGACCGACCGTCAGGGCTACCTGCGCGGCGAATGCGCGGCGGAGAACATCTATCTCGCCTGC 
CTCATCCTGGCGCAACGTTTTGGCCGGACCTCGCCGCCAGCGGCCATCGACCAGCCAGCGATCTACCTCGGC 
ACCCTGGAACTGCTCGGTGCGAGCGCGGTTCGCGACAGCGAGACGGACCAGTTCGTCCGCTACTTCAACCGC 
AAGATCTGGAGCGGCAACAAGTACACGCCGTTCGACGACGCCTACTGGGCCCGCGGCGCCATCCGCGATCGC 
CATCCGGGCGAATTCGCCTGCCTGACGCTGGGGTTCCTCCTCCACGAAGGAATCAGCCATACCCAGACGGCG 
ACGGGGGAAGACGAGGTGGCCGTCCTCGATTCCCTGTTCGAACAATTCAACGCCTCCGAGAAGACCGCCTAC 
CGCCTGCTCGCCCACACCGCGCATGGCTATGCCAGCGAAGCCGCCTTCGATGCCGAGCTGCACAGGATCCTC 
CGTCATTTCGAAATACAGCAGGGGCAGCCACCGCAGGCCCGGCTGGTCGGCATCGACCTGCTCGGCATGGAG 
ACCGCTACCGGCCTGTACCGACAGTTCTTCGACTTCCTCCTCGGACAGGCCGCGGTGTTTCGCCACTACCTG 
GACGGCAAGCCGGAAACCCGCAAGATGGTCCTGCACATCCATTGTGGAGAGGGGACCGGGGTGTCCGACGAC 
AACCGGTCGCTGTGCGGTTACTTCCTGCGCAACGCCAACGCGCTGGACGATTTCTACGCAGCGCTCTCCGCC 
TATGCCTGGAAGTGCTATGGCAACACCATCCGCCAGGGCAAGGCGCGGCTACGCGAACGGGAGAACCTGCAG 
GAACGTGACAAGGCGCCCAGCGCCCTCGCCGGCCTTTTCGACGAACTGTTTTTCGGCAACAGCCTGACCGCC 
TCCGGCCTGCGGCTACGCCGCTTCGACATCACCAGCGGGACTACCCAGGCCCTGGTCGCCTATTACGCCCGC 
ACCAACGTCGTGAACCTCTGCCAGGCGCTGGCCAGCCGCGACGCCGACGGCAACAGCTACTACCGCCGCCTG 
CTGGAGAGCGATCTGTTCAGCCTGCGCATCGGCCATGCCTACTACTACCGCAACTATCTGGCCAGCAAGTTC 
CCCGAGCTGTGCTTCGACACCAACCTGGGAAGCAATTTCATTACCGGCGCCTCCGGCCTCTTCGACTCGCTG 
CAGGAATACCGCCTGAACCGTGGCCTGCGCCATCTCGATGGATACGTCGGCACCGACCAGCTCAAGGAACTC 
AGTCTGGCCATCGCCTACCAGGGCGAACAGCGCCTGGACCCACAACAGATGCAGTACGTCCATGCCCTGGCG 
GAAAGCCAGAGCGGCTTCGACGAACTGGGCGAACACCTCCCGGGTACACCCGGCTGGGCGAAACCCGCGCTG 
GAACAGTTCTTCGTAAGTCAGTGCGCGCTCTACCGCTCCGAGGAGGATCGCTACTTCCAGTTCGAAGCCTAC 
CGGCGCCTCTTCGCCCAGGTCCTCAACTGGCGCTCCTATCTGCTGGGCGCCGACGGCCAGGGTGTCGAGCAC 
TCCAACGTACAGGACGAAGCGATCCGCATGGCGCTCCTGCTCAACTATGCCGCCGCGGACCGCCACGGCCGG 
GTTCCGGCCGCTTCGCTGGAGAATGCCCAACGCCTGCTGGTGCAACTGGGCAGCGCCTACTGGGAGGAAACC 
ATCGGCGCCGTCGACCTGGCCGGCGCGCCCCATCGGGACCGAGAGCTGCAGCGCTTCGAAGGATTCGCCGCC 
CCCGCCTCGGTCGTGCGCATCTCCACCCGCAGCAGTTGA