ViewGene
Locus Name:
GeneID:
Location:

GeneID:6169
TrivialName: PA14_27760
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27760
PAO1 Ortholog Locus:
Sequence Length:144
Protein Length:47
Start: 2407569
Stop: 2407711
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
GID4181 (PA14_27750) and GID6169 (PA14_27760) replaced by GID7406 (PA14_27755). Homology: gb|AAG06201.1|AE004708_7 (AE004708) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1]
Identities = 43/44 (97%), Positives = 43/44 (97%)
Sequence:
GTGACATTCCCCTGGGGCTGTTTCATCTACGCCTGGTTCGAGATGCCCATCGAGCGCCCGCCGCTGCCCCAC
CTCGAGGCCTGGTACCTGCGCTTGCGCGAGCGCCCGGCGTTCCGCACCGCGGTAATGACCGAACTGACCTGA
Translation:
MTFPWGCFIYAWFEMPIERPPLPHLEAWYLRLRERPAFRTAVMTELT*
AnnotationID:6170GeneID:6169
AnnotatorUID: danlee
Modification Date/Time: 2006-03-10 14:02:32
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAO57323.1| (AE016869) glutathione S-transferase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 207

 Score = 79.0 bits (193), Expect = 6e-15
 Identities = 33/44 (75%), Positives = 37/44 (84%)

>gb|AAM38661.1| (AE012031) glutathione S-transferase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 207

 Score = 75.5 bits (184), Expect = 7e-14
 Identities = 33/44 (75%), Positives = 36/44 (81%)

>gb|AAN67513.1|AE016380_1 (AE016781) glutathione S-transferase family protein [Pseudomonas
           putida KT2440]
          Length = 207

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 30/44 (68%), Positives = 37/44 (84%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
GID4181 (PA14_27750) and GID6169 (PA14_27760) replaced by GID7406 (PA14_27755).


















    ReferenceID:15974




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29455




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36248




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6169_cdd.html


    		




 
URL:









      

          
GC ORFID: 49171How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2546358Stop: 2546215

          
Length: 144


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGACATTCCCCTGGGGCTGTTTCATCTACGCCTGGTTCGAGATGCCCATCGAGCGCCCGCCGCTGCCCCAC 
CTCGAGGCCTGGTACCTGCGCTTGCGCGAGCGCCCGGCGTTCCGCACCGCGGTAATGACCGAACTGACCTGA