ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6168

TrivialName: PA14_27790

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_27790

PAO1 Ortholog Locus:

Sequence Length: 1392

Protein Length: 463

Start: 2409509

Stop: 2410900

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK22647.1| (AE005742) ISCc2, transposase, fusion [Caulobacter crescentus CB15] Identities = 72/246 (29%), Positives = 100/246 (40%), Gaps = 43/246 (17%)

Sequence:

ATGAAACAGAAGCCCCCGTCATGGGGGCTTCGCGTTTCATCGGCGCGGGCGAGCGAAATCGATGACGAAACG
GGTCCAGCCGTCGGCAGACTCGCAGCGGATCTCGCCGCCGTGGGCCTGGACGATGGAGCGGCAGATCGCCAG
GCCGAGCCCGGCGTGTTCACCCTGGCCTTCGCGGCGCGCCGGATCGGCACGATAGAACCGGTCGAACAGGCG
CGGCAAGCGCTCGGGAGGAATCGCCGGACCCTGGTTCTCCACGCTCAGGCGTCGGTCGCCGAGACGGATACG
TATCTCTCCGCCATCGGCGGTGAAGCGCAGGGCGTTGTCCAGCAGGTTGGCCAGCACCCGCCGCAGCATGCC
GCGGTCGCCGGGCAGGCTCAGGCTGCCTTCGCGCAGCAGGCGGATATCGTGGTCTTCCGCCAGCGGCTGGTA
GAACTCCAGCAGCGAGTCGACTTCCGCGCCCAGGTCCAGGGCCTGGCGGCTGGGCGCCAGCAGGCCGTGGTC
GGCCTTGGCCAGCAACAGCATGTCGTTGACCATCGCGGTGAGCCGTTCCAGCTCCTCGAGGTTGCCGTGCAG
GGCCTCGCGATAGTCCTCCAGCGAGCGCGGGCGGGACAATACCACCTGGGTCTGGGTCAGCAGACTGGTGAG
CGGGGTGCGCAACTCGTGGGCGATGTCGGCGGAGAACGCCGAGAGGCGCTGGAAGGCTTCTTCCAGGCGCGC
CAGCATGGCGTTCAGCTCGCCGGCCAGGCCGCGCAGCTCCTCCGGCATCCGGCTGGCGTCGAGGCGGGTGGT
GAGGGAGTTGGCGGAAACCCGCGCGGCGACTTCGCGCATCCGTCGCAGCGGCGCCAGGCTGGCGCCGGTGGC
CCAGGCGCCGAGCAGCGCGGTGGCCAGCGCCGACAGGCTCATGGTCAGCCAGATCAACTGGCGCATGCGTTG
CAGGAAGTGCTGGTGATGACTGATGTCGAGGATCACGGTGAGTCGCGGCGAAGCGTCGTTGCCGGGCTCCAG
CGGGGCGCCGAGTTCGCGGTTGGCGGGCAGACCGGGATGCGCAGGCTGCGGCAGGCGCTCGAACCAGAGGTT
GCCATCCGGGCCGTTCAGGCGCAGGCCGAGGTCGGGGTGGCGTGCCAGTTCGCGCAGCAGTTCCGCTTCGCG
GCGGCGCATCTGCTGTTCCGAGCCGAGGCCGCGCAGTTCGTCGCGAAACACCGCGAGCTTGGCGGACATCGC
CAGGTGGTCGAGTTCGACGAAATGCTCGTCGATGGCCCTGCTGAAGATCAATCCGGCGATCAGCGAGACCGC
CGCCGTGCAGGCGGCGAACAGCAGGCTCAGGCGGACGCCGAGGGACATCCGCGAGCCGAACCCGGCGCTCAT
TCGTCGCGCTCTTCGAGAACGTAG

Translation:

MKQKPPSWGLRVSSARASEIDDETGPAVGRLAADLAAVGLDDGAADRQAEPGVFTLAFAARRIGTIEPVEQA
RQALGRNRRTLVLHAQASVAETDTYLSAIGGEAQGVVQQVGQHPPQHAAVAGQAQAAFAQQADIVVFRQRLV
ELQQRVDFRAQVQGLAAGRQQAVVGLGQQQHVVDHRGEPFQLLEVAVQGLAIVLQRARAGQYHLGLGQQTGE
RGAQLVGDVGGERREALEGFFQARQHGVQLAGQAAQLLRHPAGVEAGGEGVGGNPRGDFAHPSQRRQAGAGG
PGAEQRGGQRRQAHGQPDQLAHALQEVLVMTDVEDHGESRRSVVAGLQRGAEFAVGGQTGMRRLRQALEPEV
AIRAVQAQAEVGVACQFAQQFRFAAAHLLFRAEAAQFVAKHRELGGHRQVVEFDEMLVDGPAEDQSGDQRDR
RRAGGEQQAQADAEGHPRAEPGAHSSRSSRT*

AnnotationID:6169 GeneID:6168

AnnotatorUID: diggins

Modification Date/Time: 2004-12-06 10:10:04

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12192

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29453

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36250

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6168_cdd.html

URL:

GC ORFID: `49170`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2544417`	Stop: `2543026`
Length: `1392`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGAAACAGAAGCCCCCGTCATGGGGGCTTCGCGTTTCATCGGCGCGGGCGAGCGAAATCGATGACGAAACG GGTCCAGCCGTCGGCAGACTCGCAGCGGATCTCGCCGCCGTGGGCCTGGACGATGGAGCGGCAGATCGCCAG GCCGAGCCCGGCGTGTTCACCCTGGCCTTCGCGGCGCGCCGGATCGGCACGATAGAACCGGTCGAACAGGCG CGGCAAGCGCTCGGGAGGAATCGCCGGACCCTGGTTCTCCACGCTCAGGCGTCGGTCGCCGAGACGGATACG TATCTCTCCGCCATCGGCGGTGAAGCGCAGGGCGTTGTCCAGCAGGTTGGCCAGCACCCGCCGCAGCATGCC GCGGTCGCCGGGCAGGCTCAGGCTGCCTTCGCGCAGCAGGCGGATATCGTGGTCTTCCGCCAGCGGCTGGTA GAACTCCAGCAGCGAGTCGACTTCCGCGCCCAGGTCCAGGGCCTGGCGGCTGGGCGCCAGCAGGCCGTGGTC GGCCTTGGCCAGCAACAGCATGTCGTTGACCATCGCGGTGAGCCGTTCCAGCTCCTCGAGGTTGCCGTGCAG GGCCTCGCGATAGTCCTCCAGCGAGCGCGGGCGGGACAATACCACCTGGGTCTGGGTCAGCAGACTGGTGAG CGGGGTGCGCAACTCGTGGGCGATGTCGGCGGAGAACGCCGAGAGGCGCTGGAAGGCTTCTTCCAGGCGCGC CAGCATGGCGTTCAGCTCGCCGGCCAGGCCGCGCAGCTCCTCCGGCATCCGGCTGGCGTCGAGGCGGGTGGT GAGGGAGTTGGCGGAAACCCGCGCGGCGACTTCGCGCATCCGTCGCAGCGGCGCCAGGCTGGCGCCGGTGGC CCAGGCGCCGAGCAGCGCGGTGGCCAGCGCCGACAGGCTCATGGTCAGCCAGATCAACTGGCGCATGCGTTG CAGGAAGTGCTGGTGATGACTGATGTCGAGGATCACGGTGAGTCGCGGCGAAGCGTCGTTGCCGGGCTCCAG CGGGGCGCCGAGTTCGCGGTTGGCGGGCAGACCGGGATGCGCAGGCTGCGGCAGGCGCTCGAACCAGAGGTT GCCATCCGGGCCGTTCAGGCGCAGGCCGAGGTCGGGGTGGCGTGCCAGTTCGCGCAGCAGTTCCGCTTCGCG GCGGCGCATCTGCTGTTCCGAGCCGAGGCCGCGCAGTTCGTCGCGAAACACCGCGAGCTTGGCGGACATCGC CAGGTGGTCGAGTTCGACGAAATGCTCGTCGATGGCCCTGCTGAAGATCAATCCGGCGATCAGCGAGACCGC CGCCGTGCAGGCGGCGAACAGCAGGCTCAGGCGGACGCCGAGGGACATCCGCGAGCCGAACCCGGCGCTCAT TCGTCGCGCTCTTCGAGAACGTAG