ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6166

TrivialName: PA14_27860

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_27860

PAO1 Ortholog Locus:

Sequence Length: 1488

Protein Length: 495

Start: 2413171

Stop: 2414658

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK75846.1| (AE007470) cell wall surface anchor family protein [Streptococcus pneumoniae TIGR4] Identities = 69/263 (26%), Positives = 121/263 (46%), Gaps = 4/263 (1%)

Sequence:

TTGCCGAGGAGGGCATCGGGCGTCTGCCGGGGCGCTGCATCGACGAGCTGGACATCGCCGTCGACGGCTACG
AGCAGCCGCGCCCGGAACTGCTGCGCTGCGACGCCGGGCGGATCGTCGAGGAGCAGCTCTACAGCCACCTGC
TCAAGTCCAACTGCCCGGTCACCGGCCAGCCCGACTGGGGCACCCTGGTGGTCGACTACCGGGGCCCGGCGC
TGGACCCGGCCAGCCTGCTGGCCTACCTGGTTTCCTTCCGCCAGCACCAGGACTTCCACGAACAGTGCGTCG
AACGCATCTTCCTCGACCTGCAGCGCCTGTTGCAGCCGCAGGCGCTCAGCGTCTACGCGCGCTACGTACGCC
GTGGCGGCCTGGATATCAATCCCTACCGCAGCCTGGCGGAGGTCGCACCGGACAACCGACGCCTGGTGCGCC
AGTAACGCCTCGCAACACGCGGATACGAAAAAGCCCCGGCCATGCCGGGGCTTTTCATTTCGGCAAGTCGTT
CAGATTCCCATGTTGGCCAGGCTCTGCACGATGGAGCGGAGCGTGCCGGCGAGGGTCGGGTGGCTGACCTCG
AAGCGCTCGACGGCGAGGTTGACCCCATCGACCAGGCTGCCTTCGTTGAGGGCGTCCTCGTTGGCCAGTTTC
AGTTCGATGTCCCTGATCAGGAGTTCCAGTTCGGCGCGCTGCTCTTCGTTCAGCGGCGGTTGTTGCTCCAGT
TGCTCGCGCAGGGCGGACAGTTCGCGCAGCAGACTCTCTTTCGGCATGGTATTTCCCTCGACGTACAAGTCT
TCGGTGGACCTCCGGCGGGCGCCGAAAGGTCCGTCCATGCCGAACAGATTAACCTGTCGGGCGCAGATGTGC
GCGATCCGGAACAATCCGCAGCAGGCGTTCCAGCAGCGGGAAGAAGTGCGTCAGTTCGGGGGTGCGCATGGC
CGGGTCCTTGGCCAGGTCGTCGAGGCGGCGCAGGGTCAGGCCGTCCTGGGCATAGGGCGCCTTGATATAGGC
CGCGGCGGCACGCTCGTCGAACGGCCCGCCTTGCAGCACCAGGCTGTGCCGGGAGGCCGGCGACAGGCTGGC
GTGGTAGCTCGGGTCCACCGCGCAGAGGAAGCGCTTGGCCGATACGTGCAGGCGCACCGGCTGCCAGACCGA
CTCTGGGAACAGCTCGCGCAGCAGGCGTGCGCCGAATTCCTCGTGGCGCAGGTCCTCCTCGTCGATCTGCGC
CGGGTCTTCGTAGAGGTGGCCGATATCGTGCAGCAGGGCGGCGACTACAAGGCTGTCCGAGCAGCCGGCGCG
CTCGGCCAGGGTCGCACACTGCAGCGCGTGCTCGGCCTGGCTGACTGCCTCGCCATAGGGCTCGGCGCCATG
GCTGGCGAAGCGTTCGGCCAGTTCGTCGAGAAAGCGGTGACGGGCGCGGCTCATGGTTTTTCTCCTTTCAGG
CGGCGGACGGCGAGGTCGTGCAGGCAGGGTTGCAGCTCGCCCAGGTGA

Translation:

MPRRASGVCRGAASTSWTSPSTATSSRARNCCAATPGGSSRSSSTATCSSPTARSPASPTGAPWWSTTGARR
WTRPACWPTWFPSASTRTSTNSASNASSSTCSACCSRRRSASTRATYAVAAWISIPTAAWRRSHRTTDAWCA
SNASQHADTKKPRPCRGFSFRQVVQIPMLARLCTMERSVPARVGWLTSKRSTARLTPSTRLPSLRASSLASF
SSMSLIRSSSSARCSSFSGGCCSSCSRRADSSRSRLSFGMVFPSTYKSSVDLRRAPKGPSMPNRLTCRAQMC
AIRNNPQQAFQQREEVRQFGGAHGRVLGQVVEAAQGQAVLGIGRLDIGRGGTLVERPALQHQAVPGGRRQAG
VVARVHRAEEALGRYVQAHRLPDRLWEQLAQQACAEFLVAQVLLVDLRRVFVEVADIVQQGGDYKAVRAAGA
LGQGRTLQRVLGLADCLAIGLGAMAGEAFGQFVEKAVTGAAHGFSPFRRRTARSCRQGCSSPR*

AnnotationID:6167 GeneID:6166

AnnotatorUID: diggins

Modification Date/Time: 2004-12-07 05:05:22

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:15972

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29449

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36254

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6166_cdd.html

URL:

GC ORFID: `49168`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2540755`	Stop: `2539268`
Length: `1488`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCCGAGGAGGGCATCGGGCGTCTGCCGGGGCGCTGCATCGACGAGCTGGACATCGCCGTCGACGGCTACG AGCAGCCGCGCCCGGAACTGCTGCGCTGCGACGCCGGGCGGATCGTCGAGGAGCAGCTCTACAGCCACCTGC TCAAGTCCAACTGCCCGGTCACCGGCCAGCCCGACTGGGGCACCCTGGTGGTCGACTACCGGGGCCCGGCGC TGGACCCGGCCAGCCTGCTGGCCTACCTGGTTTCCTTCCGCCAGCACCAGGACTTCCACGAACAGTGCGTCG AACGCATCTTCCTCGACCTGCAGCGCCTGTTGCAGCCGCAGGCGCTCAGCGTCTACGCGCGCTACGTACGCC GTGGCGGCCTGGATATCAATCCCTACCGCAGCCTGGCGGAGGTCGCACCGGACAACCGACGCCTGGTGCGCC AGTAACGCCTCGCAACACGCGGATACGAAAAAGCCCCGGCCATGCCGGGGCTTTTCATTTCGGCAAGTCGTT CAGATTCCCATGTTGGCCAGGCTCTGCACGATGGAGCGGAGCGTGCCGGCGAGGGTCGGGTGGCTGACCTCG AAGCGCTCGACGGCGAGGTTGACCCCATCGACCAGGCTGCCTTCGTTGAGGGCGTCCTCGTTGGCCAGTTTC AGTTCGATGTCCCTGATCAGGAGTTCCAGTTCGGCGCGCTGCTCTTCGTTCAGCGGCGGTTGTTGCTCCAGT TGCTCGCGCAGGGCGGACAGTTCGCGCAGCAGACTCTCTTTCGGCATGGTATTTCCCTCGACGTACAAGTCT TCGGTGGACCTCCGGCGGGCGCCGAAAGGTCCGTCCATGCCGAACAGATTAACCTGTCGGGCGCAGATGTGC GCGATCCGGAACAATCCGCAGCAGGCGTTCCAGCAGCGGGAAGAAGTGCGTCAGTTCGGGGGTGCGCATGGC CGGGTCCTTGGCCAGGTCGTCGAGGCGGCGCAGGGTCAGGCCGTCCTGGGCATAGGGCGCCTTGATATAGGC CGCGGCGGCACGCTCGTCGAACGGCCCGCCTTGCAGCACCAGGCTGTGCCGGGAGGCCGGCGACAGGCTGGC GTGGTAGCTCGGGTCCACCGCGCAGAGGAAGCGCTTGGCCGATACGTGCAGGCGCACCGGCTGCCAGACCGA CTCTGGGAACAGCTCGCGCAGCAGGCGTGCGCCGAATTCCTCGTGGCGCAGGTCCTCCTCGTCGATCTGCGC CGGGTCTTCGTAGAGGTGGCCGATATCGTGCAGCAGGGCGGCGACTACAAGGCTGTCCGAGCAGCCGGCGCG CTCGGCCAGGGTCGCACACTGCAGCGCGTGCTCGGCCTGGCTGACTGCCTCGCCATAGGGCTCGGCGCCATG GCTGGCGAAGCGTTCGGCCAGTTCGTCGAGAAAGCGGTGACGGGCGCGGCTCATGGTTTTTCTCCTTTCAGG CGGCGGACGGCGAGGTCGTGCAGGCAGGGTTGCAGCTCGCCCAGGTGA