ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6147

TrivialName: PA14_28700

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_28700

PAO1 Ortholog Locus:

Sequence Length: 2496

Protein Length: 831

Start: 2473759

Stop: 2471264

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK22724.1| (AE005749) hypothetical protein [Caulobacter crescentus CB15] Identities = 176/690 (25%), Positives = 245/690 (35%), Gaps = 130/690 (18%)

Sequence:

ATGCTGCCAGGTCAAGCCGACGGCAAGGCTTTTTCTATGCGGATCAATGCCTTTACCGTGATACACATCAAA
CAGCCTGAGGTCCGTCAGCCATTCGCCGGCCGCCGCACGGATTTGTGTCAGGATGTCTTGCGCCGGCACGTC
CTGGTCCACCAGCAGCGCCAGGTCGCGGCGTACTTCGGGGAAGCGCGACAGCTCGCGGAACTTCGGCAGGTG
GCCGTCGACCACTTCGGCCAACAGCAGCTCGAAGAGGAACACCGGCTGCTCGAGGTCGAGTTTCTTCGCCAG
TTCCGGATGCAGCGCGCCCAGGTAGCCGACCAGCCGCCCTTCCCGCTCGATGCGCGCGGTCTGCCCCGGGTG
CAGCGCCGGGTGCTCACCGGGCACGAAGCTGAAGTCGCCGAGGGCGCCGGCACTGGCCAACACTGCCTCGAC
ATCGGCCTTGGCGTCGAAGAAGTCCACGCCGTCACGGCCGTTGGCCCAGCCTTCCGGCAGGCGCTTGCCGCA
GATGGCGCCGGCGAGCATGGCTTCCTGCTTCAAGCTTTCCAGTTGACCGACGAAGCGCAGGCCGCTTTCGAA
CAGGCGGACCCGCGACTGCTGGCGGTTGAGGTTGTGCTGCAGCGCCTTGACCAGGCCCGGCCAGAGACTGGA
ACGCATCGCCGCCATGTCGGCGGAGATCGGGTTGGCCAGGGTCAGCGGCTGGGTGCCCGGATCGAACAGTTC
GAACAGGGCCGGATCGATGAAGCTGAAGGTGATCGCTTCCTGGTAGCCGCGGGCGACCAGCAGGCGCCGCAG
CAGCGGCAGCGCGGCGCGCGCTTCCGGCTTGTTGTTCGGCGCCAGGCGCGCCTGCGGGTAGCGCACCGGCAA
GCGGTTGTAGCCGTAGAGACGGGCCAGTTCCTCGATCAGGTCGACTTCCAGGGAAATGTCGAAGCGATGGCT
CGGTACGCCGACCGACCACTGCCCTTCCCCGTCGGCTACCACCGTCAGCTCCAGGGCTTGCAGCAGGCGCAC
GATCTCGGCGGCGTCCAGCGGCATGCCGAGCATCTGGGTCACGCGCTCGGCGCGCAGGGTGATCGGCGCTAC
CTTCGGCAGGTGCGCTTCGCTGACCTGCTCGACGATCGGCCCCGGCTCGCCGCCGACGATGTCGAGGATCAG
GCGCGTCGCGCGCTCCATGGCCTTGCGCGCCAGCTGGCTGTCGACGCCGCGCTCGAAGCGATGCGAGGAGTC
GGTGTGCAGGCCATAGGAGCGAGCCTTGCCGGCCAGGGCGATGGTGTCGAAGAACGCGGCTTCGAGGAACAG
GTCGCGGGTGCTGTCGCTGACGCCGCTGTGCTCACCACCCATCACCCCGGCGATGGCCAGGGCGCGCTGGTG
GTCGGCGATCACCAGGGTGTCGGCGCGCAGGGTGATTTCCTGGCCGTCGAGCAGGACCAGCTTCTCGCCGTC
CTCGGCCATGCGCACGCGCACGCCGCCGTTGATCTCGGCAAGGTCGAAGGCATGCATCGGCTGGCCCAGTTC
GATCATCACGTAGTTGGTGACGTCGACCACCGGGTCGATACTGCGAATGTCGGAACGGCGCAGGCGCTCGAC
CATCCACAACGGGGTCGGCCGGCTCAGGTCGACGTTGCGGATCACCCGGCCGAGATAGCGCGGGCAGGCGGC
CGGCGCGTCGAGTTCGACCGGACGGGTCTCGTCGTGCTGCGCGGCGAcCGCATCCaccgCCACCGGCGCCAG
CGGTACGTCGTAGATGGCGCTGACTTCGCGGGCCAGGCCGGCGAGCGACAGGCAGTCACCGCGGTTCGGGGT
CAGGCCGACCTCGATGGTGTAGTCGTCCAGCTCCAGGTAGGTGCGGACGTCCTGGCCGACCGGCGCGTCAGC
CGGCAGCTCGAGCAGACCGGCGTTCTCTTCGCTGATCTGCAATTCCTTGGCCGAGCAGAGCATGCCGAAGGA
CTCGACGCCACGCAGCTTGGCTTTCTTGATCTTGAAGTCGCCCGGCAGTTCGGCGCCGATCATGGCGAAGGG
AATCTTCAGGCCCGCGCGCACGTTGGGCGCGCCGCAGACGACCTGGAAGGTCTCGCTGCCGTTGCTGACCTG
GCAGACGCGCAGCTTGTCGGCGTCCGGATGCTGTTCGGTCGAGAGCACCTCGCCGACCACCACGCCGCTGAA
GGCGCCGGCGACCGGCAGGTCGGCGTCGACCTCGAGGCCGACCATGGACAGGCGAGCGACCAGCTCGTCATG
GGAAACCTGCGGATTTGCCCAGCTCCGCAGCCACTTTTCACTGAATTTCATCCTGTTCTCCTAAGGAATCCG
GTTGCGTTCTGGCCTAGCGGAATTGTCCGAGGAAGCGCAGATCGTTATCGAAGAACAGACGCAGGTCGTTCA
CCCCGTAGCGCAGCATGGCCAGGCGCTCGGCGCCCATGCCGAAGGCGAAGCCCTGGAATTTCTCGGGATCGA
TGTTGGACATGCGCAGCACGTTCGGGTGCACCATGCCGCAACCCATGA

Translation:

MLPGQADGKAFSMRINAFTVIHIKQPEVRQPFAGRRTDLCQDVLRRHVLVHQQRQVAAYFGEARQLAELRQV
AVDHFGQQQLEEEHRLLEVEFLRQFRMQRAQVADQPPFPLDARGLPRVQRRVLTGHEAEVAEGAGTGQHCLD
IGLGVEEVHAVTAVGPAFRQALAADGAGEHGFLLQAFQLTDEAQAAFEQADPRLLAVEVVLQRLDQARPETG
THRRHVGGDRVGQGQRLGARIEQFEQGRIDEAEGDRFLVAAGDQQAPQQRQRGARFRLVVRRQARLRVAHRQ
AVVAVETGQFLDQVDFQGNVEAMARYADRPLPFPVGYHRQLQGLQQAHDLGGVQRHAEHLGHALGAQGDRRY
LRQVRFADLLDDRPRLAADDVEDQARRALHGLARQLAVDAALEAMRGVGVQAIGASLAGQGDGVEERGFEEQ
VAGAVADAAVLTTHHPGDGQGALVVGDHQGVGAQGDFLAVEQDQLLAVLGHAHAHAAVDLGKVEGMHRLAQF
DHHVVGDVDHRVDTANVGTAQALDHPQRGRPAQVDVADHPAEIARAGGRRVEFDRTGLVVLRGDRIHRHRRQ
RYVVDGADFAGQAGERQAVTAVRGQADLDGVVVQLQVGADVLADRRVSRQLEQTGVLFADLQFLGRAEHAEG
LDATQLGFLDLEVARQFGADHGEGNLQARAHVGRAADDLEGLAAVADLADAQLVGVRMLFGREHLADHHAAE
GAGDRQVGVDLEADHGQASDQLVMGNLRICPAPQPLFTEFHPVLLRNPVAFWPSGIVRGSADRYRRTDAGRS
PRSAAWPGARRPCRRRSPGISRDRCWTCAARSGAPCRNP*

AnnotationID:6148 GeneID:6147

AnnotatorUID: diggins

Modification Date/Time: 2004-12-07 08:08:06

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12159

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29413

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36266

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6147_cdd.html

URL:

GC ORFID: `49149`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2480167`	Stop: `2482662`
Length: `2496`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCTGCCAGGTCAAGCCGACGGCAAGGCTTTTTCTATGCGGATCAATGCCTTTACCGTGATACACATCAAA CAGCCTGAGGTCCGTCAGCCATTCGCCGGCCGCCGCACGGATTTGTGTCAGGATGTCTTGCGCCGGCACGTC CTGGTCCACCAGCAGCGCCAGGTCGCGGCGTACTTCGGGGAAGCGCGACAGCTCGCGGAACTTCGGCAGGTG GCCGTCGACCACTTCGGCCAACAGCAGCTCGAAGAGGAACACCGGCTGCTCGAGGTCGAGTTTCTTCGCCAG TTCCGGATGCAGCGCGCCCAGGTAGCCGACCAGCCGCCCTTCCCGCTCGATGCGCGCGGTCTGCCCCGGGTG CAGCGCCGGGTGCTCACCGGGCACGAAGCTGAAGTCGCCGAGGGCGCCGGCACTGGCCAACACTGCCTCGAC ATCGGCCTTGGCGTCGAAGAAGTCCACGCCGTCACGGCCGTTGGCCCAGCCTTCCGGCAGGCGCTTGCCGCA GATGGCGCCGGCGAGCATGGCTTCCTGCTTCAAGCTTTCCAGTTGACCGACGAAGCGCAGGCCGCTTTCGAA CAGGCGGACCCGCGACTGCTGGCGGTTGAGGTTGTGCTGCAGCGCCTTGACCAGGCCCGGCCAGAGACTGGA ACGCATCGCCGCCATGTCGGCGGAGATCGGGTTGGCCAGGGTCAGCGGCTGGGTGCCCGGATCGAACAGTTC GAACAGGGCCGGATCGATGAAGCTGAAGGTGATCGCTTCCTGGTAGCCGCGGGCGACCAGCAGGCGCCGCAG CAGCGGCAGCGCGGCGCGCGCTTCCGGCTTGTTGTTCGGCGCCAGGCGCGCCTGCGGGTAGCGCACCGGCAA GCGGTTGTAGCCGTAGAGACGGGCCAGTTCCTCGATCAGGTCGACTTCCAGGGAAATGTCGAAGCGATGGCT CGGTACGCCGACCGACCACTGCCCTTCCCCGTCGGCTACCACCGTCAGCTCCAGGGCTTGCAGCAGGCGCAC GATCTCGGCGGCGTCCAGCGGCATGCCGAGCATCTGGGTCACGCGCTCGGCGCGCAGGGTGATCGGCGCTAC CTTCGGCAGGTGCGCTTCGCTGACCTGCTCGACGATCGGCCCCGGCTCGCCGCCGACGATGTCGAGGATCAG GCGCGTCGCGCGCTCCATGGCCTTGCGCGCCAGCTGGCTGTCGACGCCGCGCTCGAAGCGATGCGAGGAGTC GGTGTGCAGGCCATAGGAGCGAGCCTTGCCGGCCAGGGCGATGGTGTCGAAGAACGCGGCTTCGAGGAACAG GTCGCGGGTGCTGTCGCTGACGCCGCTGTGCTCACCACCCATCACCCCGGCGATGGCCAGGGCGCGCTGGTG GTCGGCGATCACCAGGGTGTCGGCGCGCAGGGTGATTTCCTGGCCGTCGAGCAGGACCAGCTTCTCGCCGTC CTCGGCCATGCGCACGCGCACGCCGCCGTTGATCTCGGCAAGGTCGAAGGCATGCATCGGCTGGCCCAGTTC GATCATCACGTAGTTGGTGACGTCGACCACCGGGTCGATACTGCGAATGTCGGAACGGCGCAGGCGCTCGAC CATCCACAACGGGGTCGGCCGGCTCAGGTCGACGTTGCGGATCACCCGGCCGAGATAGCGCGGGCAGGCGGC CGGCGCGTCGAGTTCGACCGGACGGGTCTCGTCGTGCTGCGCGGCGAcCGCATCCaccgCCACCGGCGCCAG CGGTACGTCGTAGATGGCGCTGACTTCGCGGGCCAGGCCGGCGAGCGACAGGCAGTCACCGCGGTTCGGGGT CAGGCCGACCTCGATGGTGTAGTCGTCCAGCTCCAGGTAGGTGCGGACGTCCTGGCCGACCGGCGCGTCAGC CGGCAGCTCGAGCAGACCGGCGTTCTCTTCGCTGATCTGCAATTCCTTGGCCGAGCAGAGCATGCCGAAGGA CTCGACGCCACGCAGCTTGGCTTTCTTGATCTTGAAGTCGCCCGGCAGTTCGGCGCCGATCATGGCGAAGGG AATCTTCAGGCCCGCGCGCACGTTGGGCGCGCCGCAGACGACCTGGAAGGTCTCGCTGCCGTTGCTGACCTG GCAGACGCGCAGCTTGTCGGCGTCCGGATGCTGTTCGGTCGAGAGCACCTCGCCGACCACCACGCCGCTGAA GGCGCCGGCGACCGGCAGGTCGGCGTCGACCTCGAGGCCGACCATGGACAGGCGAGCGACCAGCTCGTCATG GGAAACCTGCGGATTTGCCCAGCTCCGCAGCCACTTTTCACTGAATTTCATCCTGTTCTCCTAAGGAATCCG GTTGCGTTCTGGCCTAGCGGAATTGTCCGAGGAAGCGCAGATCGTTATCGAAGAACAGACGCAGGTCGTTCA CCCCGTAGCGCAGCATGGCCAGGCGCTCGGCGCCCATGCCGAAGGCGAAGCCCTGGAATTTCTCGGGATCGA TGTTGGACATGCGCAGCACGTTCGGGTGCACCATGCCGCAACCCATGA