ViewGene
Locus Name:
GeneID:
Location:

GeneID:6140
TrivialName: PA14_28860
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28860
PAO1 Ortholog Locus:
Sequence Length:135
Protein Length:44
Start: 2491681
Stop: 2491815
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP82950.1| (AY273870) putative transposase [Pseudomonas aeruginosa]
Identities = 37/37 (100%), Positives = 37/37 (100%)
Sequence:
ATGAGCAAGCAACGACGTACGTTTTCCGCCGAGTTCAAACGAGAGGCCGCGGCCCTGGTGTTGGACCAAGGC
TACAGCCATATCGACGCCTGCCGTTCGCTGGGGGTGGTGATTCGGCCTTGCGCCGTTGGGTGA
Translation:
MSKQRRTFSAEFKREAAALVLDQGYSHIDACRSLGVVIRPCAVG*
AnnotationID:6141GeneID:6140
AnnotatorUID: danlee
Modification Date/Time: 2005-10-12 16:04:34
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|15596176|ref|NP_249670.1|  hypothetical protein PA0979 [Pseudomonas aeruginosa PAO1]
     Length=102
     Score = 75.5 bits (184),  Expect = 5e-13
     Identities = 37/37 (100%), Positives = 37/37 (100%), Gaps = 0/37 (0%)

gi|15597133|ref|NP_250627.1|  hypothetical protein PA1937 [Pseudomonas aeruginosa PAO1]
     Length=102
     Score = 70.5 bits (171),  Expect = 2e-11
     Identities = 35/37 (94%), Positives = 36/37 (97%), Gaps = 0/37 (0%)

gi|71554558|gb|AAZ33769.1|  ISPsy24, transposase orfA [Pseudomonas syringae pv. phaseolicola 1448A]
     Length=102
     Score = 67.4 bits (163),  Expect = 1e-10
     Identities = 33/37 (89%), Positives = 35/37 (94%), Gaps = 0/37 (0%)








 
Structural Features:
COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].
             CD-Length = 116 residues, only  31.9% aligned
             Score = 41.8 bits (97), Expect = 2e-05

pfam01527, Transposase_8, Transposase.
             CD-Length = 80 residues, only  40.0% aligned
             Score = 38.3 bits (89), Expect = 2e-04






   
Genomic Context:






   
Comment:
possible frameshift with gene #5465


















    ReferenceID:12146




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29399




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:













    AnnotationID:7207GeneID:6140





    
AnnotatorUID:
        diggins

    		
    
Modification Date/Time:
        2004-12-08 11:11:31

    		





  
Gene Name:

  
Confidence Code:3






  
GeneProduct:putative transposase

  
Cell Localization:() 






   
Synonyms:

   
Cell Localization Confidence Code:5






   
MolecularFunction:

   
Functional Category:(22) Related to phage, transposon, or plasmid






 
Alternate Gene Product Name:

 
Functional Category Confidence Code:5






   
COGs:

   
Secondary Functional Category(ies):






   
EC Number:

   
Status:ACTIVE






 
Pathway:






 
Homology:
>gb|AAN69996.1|AE016638_4 (AE016790) transposase, OrfA [Pseudomonas putida KT2440]
          Length = 102

 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 28/37 (75%), Positives = 32/37 (86%)

>emb|CAD16021.1| (AL646069) PROBABLE TRANSPOSASE PROTEIN [Ralstonia solanacearum]
          Length = 102

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 26/36 (72%), Positives = 31/36 (86%)

>gb|AAO08909.1|AE016798_69 (AE016798) Putative transposase [Vibrio vulnificus CMCP6]
          Length = 98

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 21/34 (61%), Positives = 28/34 (82%)






 
Structural Features:
no data found via CDD Search






   
Genomic Context:






   
Comment:
possible frameshift with gene #5465










      

          
GC ORFID: 49142How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2462245Stop: 2462111

          
Length: 135


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAGCAAGCAACGACGTACGTTTTCCGCCGAGTTCAAACGAGAGGCCGCGGCCCTGGTGTTGGACCAAGGC 
TACAGCCATATCGACGCCTGCCGTTCGCTGGGGGTGGTGATTCGGCCTTGCGCCGTTGGGTGA