ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6138

TrivialName: PA14_29080

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_29080

PAO1 Ortholog Locus:

Sequence Length: 1347

Protein Length: 448

Start: 2517143

Stop: 2515797

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 131/470 (27%), Positives = 160/470 (34%), Gaps = 98/470 (20%)

Sequence:

TTGCGGCAGCGGCGCAACCCTCGCCGCGGACAACCTGAAGATCTACAACTGGTCCGAATACATCGCTCCCGA
AACCGTGGCGAACTTCGCCAAGGAAACCGGCATCCAGGCCACCTACGACGTCTACGACAGCAACGAGACCCT
CGACGGCAAGCTGATGACCGGCCAATCCGGCTACGACGTGGTATTCCCGTCGAACCACTTCATGGCCAAGCA
GATCCAGGCCGGCGCCCTGAAGAAGCTGGACAAGTCCCAGTTGCCCAACTGGAAGAACCTCAACCCGGTGCT
GCTCAAGGCCCTGGAGGTCAACGATCCGGGCAACCAGTACGGCTTCCCCTACCTCTGGGGCACCACCGGCAT
CGGCTACAACCCGGCGAAGATCAAGGCGGTGCTCGGCGACGACGCGCCGCTGGACTCCTGGGATATCTTCTT
CAAGCCCGAATACATGCAGAAACTGAGCAAGTGCGGGGTGGCGGTGCTGGACAACGGCCCCGAGCTGCTGCC
CATCACCCTCAACTACCTCGGCCTGCCACACCACAGCCAGAAGGCCGACGACTACAAGCAGGCCCAGGCGGC
GCTGCTGAAGGTGCGCCCGTACATCCGCTACTTCCACTCCTCGAAGTACGTCAGCGACCTGGCCAACGGCGA
GATCTGCATGGTGGTCGGTTTCTCCGGCGACATCCTGCAGGCCGCGACCCGCGCCAAGGAGGCCAACAACGG
CGTGGAAGTGCGCTACTCGACGCCGAAGGAAGGCTCGCCGCTGTGGTTCGACATGGTCTCGATGCCGGTCGA
CGCGCCCGACGAGAAGGCCGGCTACGCCTTCATGAACTACCTGCTGCGTCCCGAGGTGATGGCGGCGATCAG
CAACCATGTGCACTACGCCAACGGCAACCTGGCCGCCGACCCGCTGGTGGACGCCGAGATCAAGGCCGACCC
GGCGATCTACCCGCCGCAGGAGAAGATGGCCAAGCTGTTCGCCCTGGAATCCATGCCGCAGAAGATCGACCG
CGTGCGCACGCGCACCTGGAACACGGTGAAGACCGGCAAGTGAAGCCCAGCGCCGGCCCGGTTTGTCGCCGG
GCTGGCGTTTTAGCGCAAGGCTCGCCCACAGGCTCGTCAAATCCCGGACGGCCCGCTATAGTCCCTCTCGTT
GTCTTCATCGACCGGATAGCCTCCATGAACCAGCGCTCGCACAGCTCGCTCCCCGCCCTTCCGGTAGCCACC
GGCGAGGTCGGCGCGCGCCAGCCGTGCGCCAGCCTGGGCTGCGTTTCCCCTCCTGTAGTCGCCTCGCCTCCG
CCTCCCCCTCCCGGTTCGGCCGCCTGCCCGCCGCCGGGCGTCAGTCCCTGA

Translation:

MRQRRNPRRGQPEDLQLVRIHRSRNRGELRQGNRHPGHLRRLRQQRDPRRQADDRPIRLRRGIPVEPLHGQA
DPGRRPEEAGQVPVAQLEEPQPGAAQGPGGQRSGQPVRLPLPLGHHRHRLQPGEDQGGARRRRAAGLLGYLL
QARIHAETEQVRGGGAGQRPRAAAHHPQLPRPATPQPEGRRLQAGPGGAAEGAPVHPLLPLLEVRQRPGQRR
DLHGGRFLRRHPAGRDPRQGGQQRRGSALLDAEGRLAAVVRHGLDAGRRARREGRLRLHELPAASRGDGGDQ
QPCALRQRQPGRRPAGGRRDQGRPGDLPAAGEDGQAVRPGIHAAEDRPRAHAHLEHGEDRQVKPSAGPVCRR
AGVLAQGSPTGSSNPGRPAIVPLVVFIDRIASMNQRSHSSLPALPVATGEVGARQPCASLGCVSPPVVASPP
PPPPGSAACPPPGVSP*

AnnotationID:6139 GeneID:6138

AnnotatorUID: diggins

Modification Date/Time: 2004-12-08 14:02:44

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:15955

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29395

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36311

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6138_cdd.html

URL:

GC ORFID: `49140`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2436783`	Stop: `2438129`
Length: `1347`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCGGCAGCGGCGCAACCCTCGCCGCGGACAACCTGAAGATCTACAACTGGTCCGAATACATCGCTCCCGA AACCGTGGCGAACTTCGCCAAGGAAACCGGCATCCAGGCCACCTACGACGTCTACGACAGCAACGAGACCCT CGACGGCAAGCTGATGACCGGCCAATCCGGCTACGACGTGGTATTCCCGTCGAACCACTTCATGGCCAAGCA GATCCAGGCCGGCGCCCTGAAGAAGCTGGACAAGTCCCAGTTGCCCAACTGGAAGAACCTCAACCCGGTGCT GCTCAAGGCCCTGGAGGTCAACGATCCGGGCAACCAGTACGGCTTCCCCTACCTCTGGGGCACCACCGGCAT CGGCTACAACCCGGCGAAGATCAAGGCGGTGCTCGGCGACGACGCGCCGCTGGACTCCTGGGATATCTTCTT CAAGCCCGAATACATGCAGAAACTGAGCAAGTGCGGGGTGGCGGTGCTGGACAACGGCCCCGAGCTGCTGCC CATCACCCTCAACTACCTCGGCCTGCCACACCACAGCCAGAAGGCCGACGACTACAAGCAGGCCCAGGCGGC GCTGCTGAAGGTGCGCCCGTACATCCGCTACTTCCACTCCTCGAAGTACGTCAGCGACCTGGCCAACGGCGA GATCTGCATGGTGGTCGGTTTCTCCGGCGACATCCTGCAGGCCGCGACCCGCGCCAAGGAGGCCAACAACGG CGTGGAAGTGCGCTACTCGACGCCGAAGGAAGGCTCGCCGCTGTGGTTCGACATGGTCTCGATGCCGGTCGA CGCGCCCGACGAGAAGGCCGGCTACGCCTTCATGAACTACCTGCTGCGTCCCGAGGTGATGGCGGCGATCAG CAACCATGTGCACTACGCCAACGGCAACCTGGCCGCCGACCCGCTGGTGGACGCCGAGATCAAGGCCGACCC GGCGATCTACCCGCCGCAGGAGAAGATGGCCAAGCTGTTCGCCCTGGAATCCATGCCGCAGAAGATCGACCG CGTGCGCACGCGCACCTGGAACACGGTGAAGACCGGCAAGTGAAGCCCAGCGCCGGCCCGGTTTGTCGCCGG GCTGGCGTTTTAGCGCAAGGCTCGCCCACAGGCTCGTCAAATCCCGGACGGCCCGCTATAGTCCCTCTCGTT GTCTTCATCGACCGGATAGCCTCCATGAACCAGCGCTCGCACAGCTCGCTCCCCGCCCTTCCGGTAGCCACC GGCGAGGTCGGCGCGCGCCAGCCGTGCGCCAGCCTGGGCTGCGTTTCCCCTCCTGTAGTCGCCTCGCCTCCG CCTCCCCCTCCCGGTTCGGCCGCCTGCCCGCCGCCGGGCGTCAGTCCCTGA