ViewGene
Locus Name:
GeneID:
Location:

GeneID:6127
TrivialName: PA14_29670
AnnotatorUID: diggins
Modification Date/Time:2006-04-23 19:07:27
LocusName:PA14_29670
PAO1 Ortholog Locus:
Sequence Length:381
Protein Length:126
Start: 2571186
Stop: 2570806
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM39645.1| (AE012129) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
Identities = 52/109 (47%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Sequence:
ATGCGCGCTTTCACGATTACCTGGCGGACTACCTGCGCCGCCTGTTGGCTGCTGGCCTCGAGCCTGCCGGCG
CTGGCCGCGCCCTCCCCGCAGGCGAGCCAGGAGATCGGCCGCTTGCTGAGCTTTGTTGAAGACAGCGGCTGC
ACCTTCATCCGCAACGGCAGCGAATACCCGGCCGCGGAAGCCCGCGCCCACCTGCAGAAGAAGCTCGACTAC
CTGGAGCGCAAGGATCTGGTCGCCAGCAGCGAGGACTTCATCGAGCGCGCCGCGACCCAGAGCAGCCTCAGC
GGCAAGCCCTACCAGGTGCGCTGCGCCGGGCAGACGCGCAACTCCGCCGACTGGCTGAACCAGGAGCTGCGG
CGTCTGCGGCAAGCCCCCTGA
Translation:
MRAFTITWRTTCAACWLLASSLPALAAPSPQASQEIGRLLSFVEDSGCTFIRNGSEYPAAEARAHLQKKLDY
LERKDLVASSEDFIERAATQSSLSGKPYQVRCAGQTRNSADWLNQELRRLRQAP*
AnnotationID:6128GeneID:6127
AnnotatorUID: diggins
Modification Date/Time: 2006-04-23 19:07:12
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:12125




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29373




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49129How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2382740Stop: 2383120

          
Length: 381


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCGCGCTTTCACGATTACCTGGCGGACTACCTGCGCCGCCTGTTGGCTGCTGGCCTCGAGCCTGCCGGCG 
CTGGCCGCGCCCTCCCCGCAGGCGAGCCAGGAGATCGGCCGCTTGCTGAGCTTTGTTGAAGACAGCGGCTGC 
ACCTTCATCCGCAACGGCAGCGAATACCCGGCCGCGGAAGCCCGCGCCCACCTGCAGAAGAAGCTCGACTAC 
CTGGAGCGCAAGGATCTGGTCGCCAGCAGCGAGGACTTCATCGAGCGCGCCGCGACCCAGAGCAGCCTCAGC 
GGCAAGCCCTACCAGGTGCGCTGCGCCGGGCAGACGCGCAACTCCGCCGACTGGCTGAACCAGGAGCTGCGG 
CGTCTGCGGCAAGCCCCCTGA