ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6118

TrivialName: PA14_29960

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_29960

PAO1 Ortholog Locus:

Sequence Length: 1527

Protein Length: 508

Start: 2595714

Stop: 2594188

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 137/474 (28%), Positives = 159/474 (33%), Gaps = 101/474 (21%)

Sequence:

ATGGCGACGTGCGTCCCGACGGTGTCGCCAAACTGCTGGAGGCCTACGTATGACCCTTACCTCCATTGGTCC
GGCCAACCGCATGGCGCGTTCGGCGGAAACCCATCCGCTGACCTGGCGCCTGCGCGAAGACGCCCAGCCCGT
CTGGCTCGAGGAATATCAGAGCAAGGACGGCTATGCCGCGGCGCGCAAGGCGCTGACCCAGATGGCCCAGGA
CGACATCGTCCAGACCGTCAAGGACTCCGGCCTCAAGGGCCGCGGCGGCGCGGGCTTCCCCACCGGCGTGAA
GTGGGGCCTGATGCCGAAGGACGAGTCGCTGAACATCCGCTACCTGCTGTGCAACGCGGACGAGATGGAGCC
GAACACCTGGAAGGACCGCATGCTCATGGAGCAGCTGCCGCACCTGCTGGTGGAAGGCATGCTGATTTCCGC
GCGTGCGCTGAAGGCCTACCGCGGCTACATCTTCCTGCGCGGCGAATACGTCGACGCGGCGCGCAACCTCAA
CCGCGCCATCGACGAAGCCAAGGCCGCCGGCCTGCTCGGCAAGAACATCCTCGGCAGCGGCTTCGATTTCGA
GCTGTTCGTCCACACCGGTGCCGGCCGCTACATCTGCGGCGAAGAGACCGCGCTGATCAACTCGCTGGAAGG
CCGCCGCGCCAACCCGCGTTCCAAACCGCCCTTCCCTGCCGCCGTCGGCGTCTGGGGCAAGCCGACCTGCGT
GAACAACGTGGAGACGCTGTGCAACGTGCCGGCCATCGTCGGCAACGGCGTGGACTGGTACAAGACCCTGGC
CCGCCCCGGCAGCGAAGACATGGGCACCAAGCTGATGGGCTTCTCCGGCAAGGTGAAGAACCCCGGCCTGTG
GGAACTGCCGTTCGGCGTCAGCGCCCGCGAGCTGTTCGAGGACTACGCCGGCGGCATGCGCGACGGCTTCCA
GCTCAAGGCCTGGCAGCccggcGGCGCcggtAcCGGCTTCCTGCTCCcgGAGCACCTGGATGCGCAGATGTT
CGccggcgGCATCGCcaaggTCggCAcccGGATGGGCAcCGGCCTggcccatggcggtgGACGACAGCATCa
aCatggtttcccctGCTGCGCAACATggaagagttcttcGCCcgcgagTcctgcggctggtgcacccCcctg
ccgCgacggcctGccgtggagcgtgaagctgcTGCGCgccctagAgcgtggcgaAGGccAGCCCGGCgacct
cgAGACCcTCaaGcaactggtCAaCttcctCggcCCAGGCAAgaccttCTGCGCCCATGCGCCGGGAGCCGT
CGAGCCGCTGGGCAGCGCccTCAAGTATTTCCGTGCCGAATTCGAGGCGGGCATCTCCCGCCAGCCTtCGGC
CGCGCCGCGCCCGGCAACGGTCGGCGCCTGATGCTTTGCAGCCGGACGGCCAGCCGTCCGGCGATGTTTCGT
CGTCGTGCCGCGGCCCGGCCGCAGGCCCGACGGAACCGTGAGTTTCTATTAGCCACGCCCGCTGACAACGGG
CCAACGAAGACTTGA

Translation:

MATCVPTVSPNCWRPTYDPYLHWSGQPHGAFGGNPSADLAPARRRPARLARGISEQGRLCRGAQGADPDGPG
RHRPDRQGLRPQGPRRRGLPHRREVGPDAEGRVAEHPLPAVQRGRDGAEHLEGPHAHGAAAAPAGGRHADFR
ACAEGLPRLHLPARRIRRRGAQPQPRHRRSQGRRPARQEHPRQRLRFRAVRPHRCRPLHLRRRDRADQLAGR
PPRQPAFQTALPCRRRRLGQADLREQRGDAVQRAGHRRQRRGLVQDPGPPRQRRHGHQADGLLRQGEEPRPV
GTAVRRQRPRAVRGLRRRHARRLPAQGLAARRRRYRLPAPGAPGCADVRRRHRQGRHPDGHRPGPWRWTTAS
TWFPLLRNMEEFFARESCGWCTPLPRRPAVEREAAARPRAWRRPARRPRDPQATGQLPRPRQDLLRPCAGSR
RAAGQRPQVFPCRIRGGHLPPAFGRAAPGNGRRLMLCSRTASRPAMFRRRAAARPQARRNREFLLATPADNG
PTKT*

AnnotationID:6119 GeneID:6118

AnnotatorUID: diggins

Modification Date/Time: 2004-07-13 20:08:10

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12108

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29354

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33173

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6118_cdd.html

URL:

GC ORFID: `49120`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2358212`	Stop: `2359738`
Length: `1527`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGCGACGTGCGTCCCGACGGTGTCGCCAAACTGCTGGAGGCCTACGTATGACCCTTACCTCCATTGGTCC GGCCAACCGCATGGCGCGTTCGGCGGAAACCCATCCGCTGACCTGGCGCCTGCGCGAAGACGCCCAGCCCGT CTGGCTCGAGGAATATCAGAGCAAGGACGGCTATGCCGCGGCGCGCAAGGCGCTGACCCAGATGGCCCAGGA CGACATCGTCCAGACCGTCAAGGACTCCGGCCTCAAGGGCCGCGGCGGCGCGGGCTTCCCCACCGGCGTGAA GTGGGGCCTGATGCCGAAGGACGAGTCGCTGAACATCCGCTACCTGCTGTGCAACGCGGACGAGATGGAGCC GAACACCTGGAAGGACCGCATGCTCATGGAGCAGCTGCCGCACCTGCTGGTGGAAGGCATGCTGATTTCCGC GCGTGCGCTGAAGGCCTACCGCGGCTACATCTTCCTGCGCGGCGAATACGTCGACGCGGCGCGCAACCTCAA CCGCGCCATCGACGAAGCCAAGGCCGCCGGCCTGCTCGGCAAGAACATCCTCGGCAGCGGCTTCGATTTCGA GCTGTTCGTCCACACCGGTGCCGGCCGCTACATCTGCGGCGAAGAGACCGCGCTGATCAACTCGCTGGAAGG CCGCCGCGCCAACCCGCGTTCCAAACCGCCCTTCCCTGCCGCCGTCGGCGTCTGGGGCAAGCCGACCTGCGT GAACAACGTGGAGACGCTGTGCAACGTGCCGGCCATCGTCGGCAACGGCGTGGACTGGTACAAGACCCTGGC CCGCCCCGGCAGCGAAGACATGGGCACCAAGCTGATGGGCTTCTCCGGCAAGGTGAAGAACCCCGGCCTGTG GGAACTGCCGTTCGGCGTCAGCGCCCGCGAGCTGTTCGAGGACTACGCCGGCGGCATGCGCGACGGCTTCCA GCTCAAGGCCTGGCAGCccggcGGCGCcggtAcCGGCTTCCTGCTCCcgGAGCACCTGGATGCGCAGATGTT CGccggcgGCATCGCcaaggTCggCAcccGGATGGGCAcCGGCCTggcccatggcggtgGACGACAGCATCa aCatggtttcccctGCTGCGCAACATggaagagttcttcGCCcgcgagTcctgcggctggtgcacccCcctg ccgCgacggcctGccgtggagcgtgaagctgcTGCGCgccctagAgcgtggcgaAGGccAGCCCGGCgacct cgAGACCcTCaaGcaactggtCAaCttcctCggcCCAGGCAAgaccttCTGCGCCCATGCGCCGGGAGCCGT CGAGCCGCTGGGCAGCGCccTCAAGTATTTCCGTGCCGAATTCGAGGCGGGCATCTCCCGCCAGCCTtCGGC CGCGCCGCGCCCGGCAACGGTCGGCGCCTGATGCTTTGCAGCCGGACGGCCAGCCGTCCGGCGATGTTTCGT CGTCGTGCCGCGGCCCGGCCGCAGGCCCGACGGAACCGTGAGTTTCTATTAGCCACGCCCGCTGACAACGGG CCAACGAAGACTTGA