ViewGene

Locus Name:
GeneID:
Location:

GeneID:6106
TrivialName: PA14_30640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30640
PAO1 Ortholog Locus:
Sequence Length:2751
Protein Length:916
Start: 2657966
Stop: 2655216
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC17432.1| (AP005216) putative phosphate transport protein [Corynebacterium efficiens YS-314]
Identities = 60/218 (27%), Positives = 88/218 (40%), Gaps = 30/218 (13%)
Sequence:
GTGCAGGACGGCATAAATCTGCTCGGCAAGCTTTTTACTGATACCGGGGGCTTTGGCCAGTTCATCGATACT
CGCCCGCGACAATTCCTGCAACCCGCCGAAATGCTTGAGCAGATCGCGCCGACGTTTCGGGCCGACGCCAGG
GACGTCCTCCAGCGTCGACGTCCGCCGTGCCTTGCCGCGCCGCGCACGGTGGCCGGTGATGGCGAAACGGTG
CGCTTCGTCACGTATCTGCTGGATCAGGTGCAGCGCCGGCGAATCGGCCGGCAGGGTGAACTCGTGGGAGGC
ATCGTTCAGGTAGAGGGTTTCCAGCCCCGGCTTGCGGGTCACGCCCTTGGCCACGCCGAGCAGGATCAGACC
GGCGACCGCCAGTTCCTGGAGCACCTCCTGGGCCATGGCCAATTGCCCCTTGCCGCCATCCACCAGGAGAAT
GTCGGGCATCTTCCCCTCGCCGTCCTTCAGGCGACTGAAGCGGCGGGTCAGCGCCTGGTGCATCGCCGCGTA
GTCGTCGCCGGCCGTGACGCCTTCGATGTTGTAGCGGCGATAGTCCGACTTCAGCGGCCCTTCCGGGCCGAA
CACCACGCAGGAAGCCACGGTGGCCTCGCCGCTGGAGTGACTGATATCGAAGCACTCCAGGCGTTGCGGCGG
CTCCGCCAGGTCGAGCGCCTCGGCAAGGGCTTCGAAGCGTGCCGCCACATGCTGGCGGTTGGCCAGGCGTGC
GCCCAGGGCCTGTTCGGCGTTGGTCACCGCCAGTTGCTGCCAGCGGGCGCGGGTACCACGCACCCGGTAGCT
GATCTCCAGTTCGCGGCCTCGCGCTTCGGCGATCGCCGAAACCAGCACCGGGAAATCCTCGTGCGTCACGTT
GACGATCAACTCCGCCGGCAGGTCGCGCTCCTGGTGGCTGAGATAGTACTGGCCAAGGAACGCCAGCAGCAC
TTCGCCCACCTCCTCCTCGATCGCGACCTGCGGGAAGAAGTTCTTGCTGCCCAGCACCCGCCCGCCGCGTAC
GCTGATCAGGTGTACGCAAGCGCCGCCAGGGGTGACGATGGCGGCGACGATGTCGACGTCGCCGTTGCCACC
TTCCATGCTCTGCTGGTCCTGGACCCGCCGCAGGATCGCCACCTGGTCGCGCAACTCCGCCGCCTTCTCGAA
GTCCAGGCGCATCGCCGCCTGCTCCATGCCGACGTTCAGCTCGTCGGCCAGCGCGTTGCTCCTTCCTTCGAG
GAACATCACCGAGTGGCGCACGTCCTCGGCGTACTCCTCAGGACTGACCAGTCCCACGCAGGGCCCCTTGCA
GCGCTTGATCTGGTATTGCAGGCAGGGCCGCGTACGGTTGCGGAAATAGCTGTCCTCGCACTGGCGGACGAG
AAACGCCTTCTGCAGCAGGTTGAGGCTCTCGCGGATCGCTCCCGCGCTCGGATAGGGACCGAAGTAACGCCC
CTTGCGCTTCTTCGCGCCACGGTGCAGGGACAGCCGCGGATACTCATCCTCGCTGGAGAGGAACACGAAGGG
ATAGGACTTGTCGTCCCGCAGCAGGATGTTGTAGGGCGGCCGCCACTCCTTGATCAGCGTCTGCTCCAGCAG
CAACGCCTCGGTTTCATTGGCGGTGATGGTGGTTTCCACCTGGGCGATGCGCGCCACCAGCGCAGCGGTCTT
CGGCGCCAGGCCGGACTTGCGGAAATAGCTGGCCAGGCGCTTCTTCAGGCTCTTCGCCTTGCCCACGTAGAG
AAGCTTGGCGTCCGCATCGAACATGCGGTAGACGCCCGGACGATTGCTACAGGTAGCGAGGAAGGCGCTCGC
GTCGAAAACGGCGCTCATCTAGCTGGCGGCATCGACCATGCCGTGGCGGACGGCGAGCAGCGCCAGCTCCAC
GTCGCTGGTGATCGAGAGCTTCTCGAAGATGCGGTAGCGATAGGTATTCACGGTCTTCGGCGACAGGCACAG
CTTGTCGGAGATGCTCTGCACCTTGTGGCAGTTGGCGATCATCAGGGCGATCTGGATCTCGCGCTCGGACAG
CGAATCGAAGGGGGAATCGTGCTGCTGCGGCTGGAAGGACTTCAGCGCCAGTTGCTGGGCGATCTGCGGGCT
GATATAGCGCTGGCCGGCGAAGACCTGGCGAATAGCCTGGACCATTTCCTCCAGCCCCGCGCCCTTGGTCAT
GTAGCCGGCGGCGCCGGCCTGCATGAGGCGGGTGGGGAACGGATCCTCTTCGCAGACGGTGACTACCACGAC
CTTGATGTCGGGCTGGCTGCGCAGCAGCTTGCGGGTCGCCTCCAGGCCGCCGATACCGGGCATCTTCACGTC
CATCAGGACGACATCCGGCTTCAGCTCGCGGGCCAGTTTCAGACAGTCTTCACCGCAGTCGGCCTGGCCGAC
CACTTGCAAGCCTTCGATGTCGGCCAGCATGCGGGTAATACCGGTGCGTACCAGATCGTGGTCGTCGACCAC
CAGCACCTTAATCACGCTGCACCTCGTCGCGCATTAGCAGACAACCGCCCACACGGGCCCCCAGGAGATTTC
GGCAACCTTAACAGAAAGCCATCCCATGACCTAGCTTGGCGCAAAGGCGTCATAAATCAAGCGTCATGGAAA
CATCATTCGACGGCATCGAACGGGCGCTGCGAAGTATACCGCCAGCCCCCGGCGAGCGGCAGACCGGATCGC
AGCAAAAACCGGCGAACCTGTGGAGAGCCCAGCGACGCCGGGCCTGGTAAAGCGCAAGCGCCCTGGTCGCCC
GGGACTTCTCCATAG
Translation:
MQDGINLLGKLFTDTGGFGQFIDTRPRQFLQPAEMLEQIAPTFRADARDVLQRRRPPCLAAPRTVAGDGETV
RFVTYLLDQVQRRRIGRQGELVGGIVQVEGFQPRLAGHALGHAEQDQTGDRQFLEHLLGHGQLPLAAIHQEN
VGHLPLAVLQATEAAGQRLVHRRVVVAGRDAFDVVAAIVRLQRPFRAEHHAGSHGGLAAGVTDIEALQALRR
LRQVERLGKGFEACRHMLAVGQACAQGLFGVGHRQLLPAGAGTTHPVADLQFAASRFGDRRNQHREILVRHV
DDQLRRQVALLVAEIVLAKERQQHFAHLLLDRDLREEVLAAQHPPAAYADQVYASAARGDDGGDDVDVAVAT
FHALLVLDPPQDRHLVAQLRRLLEVQAHRRLLHADVQLVGQRVAPSFEEHHRVAHVLGVLLRTDQSHAGPLA
ALDLVLQAGPRTVAEIAVLALADEKRLLQQVEALADRSRARIGTEVTPLALLRATVQGQPRILILAGEEHEG
IGLVVPQQDVVGRPPLLDQRLLQQQRLGFIGGDGGFHLGDARHQRSGLRRQAGLAEIAGQALLQALRLAHVE
KLGVRIEHAVDARTIATGSEEGARVENGAHLAGGIDHAVADGEQRQLHVAGDRELLEDAVAIGIHGLRRQAQ
LVGDALHLVAVGDHQGDLDLALGQRIEGGIVLLRLEGLQRQLLGDLRADIALAGEDLANSLDHFLQPRALGH
VAGGAGLHEAGGERILFADGDYHDLDVGLAAQQLAGRLQAADTGHLHVHQDDIRLQLAGQFQTVFTAVGLAD
HLQAFDVGQHAGNTGAYQIVVVDHQHLNHAAPRRALADNRPHGPPGDFGNLNRKPSHDLAWRKGVINQASWK
HHSTASNGRCEVYRQPPASGRPDRSKNRRTCGEPSDAGPGKAQAPWSPGTSP*
AnnotationID:6107GeneID:6106
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 08:08:41
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15927
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29331
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49108How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2295960Stop: 2298710
Length: 2751
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: psyr_15may02_Scaffold5_revised_gene6039Homolog Bit Score 259.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6039 (BLASTP 259)
GC ORF Sequence
GTGCAGGACGGCATAAATCTGCTCGGCAAGCTTTTTACTGATACCGGGGGCTTTGGCCAGTTCATCGATACT
CGCCCGCGACAATTCCTGCAACCCGCCGAAATGCTTGAGCAGATCGCGCCGACGTTTCGGGCCGACGCCAGG
GACGTCCTCCAGCGTCGACGTCCGCCGTGCCTTGCCGCGCCGCGCACGGTGGCCGGTGATGGCGAAACGGTG
CGCTTCGTCACGTATCTGCTGGATCAGGTGCAGCGCCGGCGAATCGGCCGGCAGGGTGAACTCGTGGGAGGC
ATCGTTCAGGTAGAGGGTTTCCAGCCCCGGCTTGCGGGTCACGCCCTTGGCCACGCCGAGCAGGATCAGACC
GGCGACCGCCAGTTCCTGGAGCACCTCCTGGGCCATGGCCAATTGCCCCTTGCCGCCATCCACCAGGAGAAT
GTCGGGCATCTTCCCCTCGCCGTCCTTCAGGCGACTGAAGCGGCGGGTCAGCGCCTGGTGCATCGCCGCGTA
GTCGTCGCCGGCCGTGACGCCTTCGATGTTGTAGCGGCGATAGTCCGACTTCAGCGGCCCTTCCGGGCCGAA
CACCACGCAGGAAGCCACGGTGGCCTCGCCGCTGGAGTGACTGATATCGAAGCACTCCAGGCGTTGCGGCGG
CTCCGCCAGGTCGAGCGCCTCGGCAAGGGCTTCGAAGCGTGCCGCCACATGCTGGCGGTTGGCCAGGCGTGC
GCCCAGGGCCTGTTCGGCGTTGGTCACCGCCAGTTGCTGCCAGCGGGCGCGGGTACCACGCACCCGGTAGCT
GATCTCCAGTTCGCGGCCTCGCGCTTCGGCGATCGCCGAAACCAGCACCGGGAAATCCTCGTGCGTCACGTT
GACGATCAACTCCGCCGGCAGGTCGCGCTCCTGGTGGCTGAGATAGTACTGGCCAAGGAACGCCAGCAGCAC
TTCGCCCACCTCCTCCTCGATCGCGACCTGCGGGAAGAAGTTCTTGCTGCCCAGCACCCGCCCGCCGCGTAC
GCTGATCAGGTGTACGCAAGCGCCGCCAGGGGTGACGATGGCGGCGACGATGTCGACGTCGCCGTTGCCACC
TTCCATGCTCTGCTGGTCCTGGACCCGCCGCAGGATCGCCACCTGGTCGCGCAACTCCGCCGCCTTCTCGAA
GTCCAGGCGCATCGCCGCCTGCTCCATGCCGACGTTCAGCTCGTCGGCCAGCGCGTTGCTCCTTCCTTCGAG
GAACATCACCGAGTGGCGCACGTCCTCGGCGTACTCCTCAGGACTGACCAGTCCCACGCAGGGCCCCTTGCA
GCGCTTGATCTGGTATTGCAGGCAGGGCCGCGTACGGTTGCGGAAATAGCTGTCCTCGCACTGGCGGACGAG
AAACGCCTTCTGCAGCAGGTTGAGGCTCTCGCGGATCGCTCCCGCGCTCGGATAGGGACCGAAGTAACGCCC
CTTGCGCTTCTTCGCGCCACGGTGCAGGGACAGCCGCGGATACTCATCCTCGCTGGAGAGGAACACGAAGGG
ATAGGACTTGTCGTCCCGCAGCAGGATGTTGTAGGGCGGCCGCCACTCCTTGATCAGCGTCTGCTCCAGCAG
CAACGCCTCGGTTTCATTGGCGGTGATGGTGGTTTCCACCTGGGCGATGCGCGCCACCAGCGCAGCGGTCTT
CGGCGCCAGGCCGGACTTGCGGAAATAGCTGGCCAGGCGCTTCTTCAGGCTCTTCGCCTTGCCCACGTAGAG
AAGCTTGGCGTCCGCATCGAACATGCGGTAGACGCCCGGACGATTGCTACAGGTAGCGAGGAAGGCGCTCGC
GTCGAAAACGGCGCTCATCTAGCTGGCGGCATCGACCATGCCGTGGCGGACGGCGAGCAGCGCCAGCTCCAC
GTCGCTGGTGATCGAGAGCTTCTCGAAGATGCGGTAGCGATAGGTATTCACGGTCTTCGGCGACAGGCACAG
CTTGTCGGAGATGCTCTGCACCTTGTGGCAGTTGGCGATCATCAGGGCGATCTGGATCTCGCGCTCGGACAG
CGAATCGAAGGGGGAATCGTGCTGCTGCGGCTGGAAGGACTTCAGCGCCAGTTGCTGGGCGATCTGCGGGCT
GATATAGCGCTGGCCGGCGAAGACCTGGCGAATAGCCTGGACCATTTCCTCCAGCCCCGCGCCCTTGGTCAT
GTAGCCGGCGGCGCCGGCCTGCATGAGGCGGGTGGGGAACGGATCCTCTTCGCAGACGGTGACTACCACGAC
CTTGATGTCGGGCTGGCTGCGCAGCAGCTTGCGGGTCGCCTCCAGGCCGCCGATACCGGGCATCTTCACGTC
CATCAGGACGACATCCGGCTTCAGCTCGCGGGCCAGTTTCAGACAGTCTTCACCGCAGTCGGCCTGGCCGAC
CACTTGCAAGCCTTCGATGTCGGCCAGCATGCGGGTAATACCGGTGCGTACCAGATCGTGGTCGTCGACCAC
CAGCACCTTAATCACGCTGCACCTCGTCGCGCATTAGCAGACAACCGCCCACACGGGCCCCCAGGAGATTTC
GGCAACCTTAACAGAAAGCCATCCCATGACCTAGCTTGGCGCAAAGGCGTCATAAATCAAGCGTCATGGAAA
CATCATTCGACGGCATCGAACGGGCGCTGCGAAGTATACCGCCAGCCCCCGGCGAGCGGCAGACCGGATCGC
AGCAAAAACCGGCGAACCTGTGGAGAGCCCAGCGACGCCGGGCCTGGTAAAGCGCAAGCGCCCTGGTCGCCC
GGGACTTCTCCATAG