ViewGene
Locus Name:
GeneID:
Location:

GeneID:6079
TrivialName: PA14_31120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31120
PAO1 Ortholog Locus:
Sequence Length:339
Protein Length:112
Start: 2707125
Stop: 2706787
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD61129.1| (AJ536756) hypothetical protein [Ralstonia oxalatica]
Identities = 83/96 (86%), Positives = 89/96 (92%), Gaps = 3/96 (3%)
Sequence:
TTGAAAGTGCCTCCATCCGGCCGCGTGGTGTGGCCGGGCTTGATGGAGGTTCATCCCATGCGACCAGCTCCC
TTGCGGCCTGCCGCCACTGTCTCGACCGCTGCCGCGCAGCCGCAGCGTTACCTCACCAACGACGAAGCCGCC
GAGTACCTGCGCCTGTCGCCGCGCACGCTGGAGAAGCAGCGCGTGATCGGCGGCGGGCCACGCTTTCGCAAG
TTCGGCCGGCGCGTCATGTACGCCGTGGCCGACCTCGACGCCTGGGCGGCCGACCGCAGCTTCGAGACGACT
TCCGATCCCGAGTACGCCGAGCACCACTCGGCGGACAGCCGTGCGCGCTGA
Translation:
MKVPPSGRVVWPGLMEVHPMRPAPLRPAATVSTAAAQPQRYLTNDEAAEYLRLSPRTLEKQRVIGGGPRFRK
FGRRVMYAVADLDAWAADRSFETTSDPEYAEHHSADSRAR*
AnnotationID:6080GeneID:6079
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 16:04:51
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|68530392|gb|EAN53354.1|  conserved hypothetical protein [Ralstonia metallidurans CH34]
     Length=93
     Score =  189 bits (480),  Expect = 2e-47
     Identities = 93/93 (100%), Positives = 93/93 (100%), Gaps = 0/93 (0%)

gi|56552833|ref|YP_163672.1|  hypothetical protein ZMO1937 [Zymomonas mobilis subsp. mobilis ZM4]
     Length=113
     Score =  188 bits (477),  Expect = 5e-47
     Identities = 91/110 (82%), Positives = 96/110 (87%), Gaps = 0/110 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15912




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29278




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6079
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198329
                           emb|CAD61129.1|
                           (AJ536756) hypothetical protein [Ralstonia oxalatica]
                           115
                           72.17
                           76.52
                           22
                           426.0
     

     
     
198330
                           emb|CAD16314.1|
                           (AL646071) HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           113
                           66.37
                           70.79
                           23
                           385.0
     

     






      

          
GC ORFID: 49081How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2246801Stop: 2247139

          
Length: 339


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
TTGAAAGTGCCTCCATCCGGCCGCGTGGTGTGGCCGGGCTTGATGGAGGTTCATCCCATGCGACCAGCTCCC 
TTGCGGCCTGCCGCCACTGTCTCGACCGCTGCCGCGCAGCCGCAGCGTTACCTCACCAACGACGAAGCCGCC 
GAGTACCTGCGCCTGTCGCCGCGCACGCTGGAGAAGCAGCGCGTGATCGGCGGCGGGCCACGCTTTCGCAAG 
TTCGGCCGGCGCGTCATGTACGCCGTGGCCGACCTCGACGCCTGGGCGGCCGACCGCAGCTTCGAGACGACT 
TCCGATCCCGAGTACGCCGAGCACCACTCGGCGGACAGCCGTGCGCGCTGA