ViewGene
Locus Name:
GeneID:
Location:

GeneID:6069
TrivialName: PA14_31250
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31250
PAO1 Ortholog Locus:
Sequence Length:393
Protein Length:130
Start: 2717738
Stop: 2717346
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
ref|ZP_00024421.1| hypothetical protein [Ralstonia metallidurans] (181 aa long), Score = 243 bits (620), Expect = 4e-64 Identities = 118/130 (90%), Positives = 124/130 (95%)
Sequence:
ATGAACGACAAATCACACGTTTCCCTCGAACAGCACGTTTGCCTGGTCTGCGGCACGGCGTTCGATACCGGC
GCGATCCTGCTGGACAAGCGCCTGCGCGCGAGCATGGAGCGCCACACGGCGACCGGCTGGGGCCTGTGTCCC
GAGCATCAGAAGCTGTCCGATGACGGCTTTGTCGCGCTGGTCGAATGCGATCCGCAGCGCAGCGGCGCTCAG
GGCGGCGGGTGCATGAAGCCCGAGCAGGCGTATCGCACGGGCCGGCTGGCCCATCTGCGGCGCTCGGTGTTC
GCGCAGGTGTTCAACGTGCCGATCGCGGAGAAGCAGGCTTGCGTGTTCGTTGAGCTTGGCGTGATCGACCAG
TTGCAGTCGATGACGGCAACGGCGACGAGCTGA
Translation:
MNDKSHVSLEQHVCLVCGTAFDTGAILLDKRLRASMERHTATGWGLCPEHQKLSDDGFVALVECDPQRSGAQ
GGGCMKPEQAYRTGRLAHLRRSVFAQVFNVPIAEKQACVFVELGVIDQLQSMTATATS*
AnnotationID:6070GeneID:6069
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 17:05:18
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
 gi|68530383|gb|EAN53345.1|  hypothetical protein RmetDRAFT_3929 [Ralstonia metallidurans CH34]
     Length=130
     Score =  243 bits (620),  Expect = 1e-63
     Identities = 118/130 (90%), Positives = 124/130 (95%), Gaps = 0/130 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:12020




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16927




  
Author/Investigator(s):
        





  
Title:
        blastp search against nr database




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Blast (text/plain)







    
Data:6069blast.cgi


    		




 
URL:

















    ReferenceID:29259




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49071How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2236188Stop: 2236580

          
Length: 393


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAACGACAAATCACACGTTTCCCTCGAACAGCACGTTTGCCTGGTCTGCGGCACGGCGTTCGATACCGGC 
GCGATCCTGCTGGACAAGCGCCTGCGCGCGAGCATGGAGCGCCACACGGCGACCGGCTGGGGCCTGTGTCCC 
GAGCATCAGAAGCTGTCCGATGACGGCTTTGTCGCGCTGGTCGAATGCGATCCGCAGCGCAGCGGCGCTCAG 
GGCGGCGGGTGCATGAAGCCCGAGCAGGCGTATCGCACGGGCCGGCTGGCCCATCTGCGGCGCTCGGTGTTC 
GCGCAGGTGTTCAACGTGCCGATCGCGGAGAAGCAGGCTTGCGTGTTCGTTGAGCTTGGCGTGATCGACCAG 
TTGCAGTCGATGACGGCAACGGCGACGAGCTGA