ViewGene

Locus Name:
GeneID:
Location:

GeneID:6058
TrivialName: PA14_31490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31490
PAO1 Ortholog Locus:
Sequence Length:2133
Protein Length:710
Start: 2740084
Stop: 2737952
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAA40250.1| (X56928) tecR [Actinoplanes teichomyceticus]
Identities = 80/262 (30%), Positives = 104/262 (39%), Gaps = 33/262 (12%)
Sequence:
GTGACCAGGAACACTCGATTTTCGATACGCACGTCGTTTTCTCCTGCTGAATCAGTTCGCGGCGGCCGCCCG
TGGGGCCGCCTCGCGTTGCCGGGCGATCTCCTGGTTGCGCAGGAGAAAGCGCTGGATCTTGCCGCTGGGGGT
CTTCGGCAGTTCCTCGAGGAACTCGATCTCCCGCGGGTAGGCGTGCGCCGACAGGCGCTGGCGCACGTATCG
CTGCAGTTCGTCCGCCAGTTCCGGCGTCGGCCGGTGGCCGGCGCAGAGCACGACGAAGGCCTTGACCAGTTC
GGTGCGCTCCGGGTCGGGCTTGCCGATCACCGCCGCCTCCATCACTGCCGGGTGTTCGATCAGCGCGCTCTC
CACATCGAACGGGCCGACCCGGTAGCCAGAGGTGGTAATGACGTCGTCGGCGCGGCCGACGAAGCTGATGCT
gcCGTCTTCGTTGAGTTCGACGGTATCGCCGCTCAGGTAGTAGTCGCCGACGAAGGCTGCGGTTTCCAGGCC
CTGGTAGCCGGGGAACCACATCAGCGGCGAACGCCGCCGGTCGAGGGCGAGGATGCCCGGCTGGCCGGGCGG
CAGTTCGTTGAGATCGTCGTCCAGCACTACCACCCGGTGCCCGGGACAGGCGAATCCGGCGGCGCCGACCCG
CACCGGATGCGCCAGGGCATGGTGGTTGCACAGCACCATGCCCAGCTCGGTCTGCCCGTAATGGTCGTGGAT
GGTGGTGCCGAGCCTGTCGGCGAACCAGCGGATCACCTCCGGCGTCAACGGCTCGCCGGCGCTGCTGACCGC
GCGCAGGCGCCCCTTCAGCGCAGTTTCCGCGGCCGCGCCGGCGGCCATCAGCAGGCGATAGGCGGTGGGCGA
TCCGGCGAGGTTGGTGATGCCGTAGTCACGGATGATCCGGCAGGTGCTTTCCACGCTGAACGGCCCTTCGTA
GAAGGTGGTCGGATGGCCCATGGCGAGGGGACCGGCGACAGCGTAGTAGAGGCCGTAGGCCCAGCCCGGATC
GGCGAGGTTCCAGAAGGCGTCCTCGGGGCGCAGGTCCACCGCCTCGCGCAGGTAGCCGACGAAGGCGAGGAT
CGCCTTGAGCGGCACCGGCACCGGTTTGGCCAGGCCGGTGGTGCCGGAGGTGAACATCATCAGGAACGGATC
CTCGCCGCTGCGCGGAACCGGCTCGAATTCGGCCGGATAGCGCTCCAGCTCGGCCCAGAAGCTGAAATCGCC
GCGACGGATGCCCTGCCCCTTCGGTCCGCCGACGGTGACGGCCAGAGGCGGATCGGCGAGTTCGTCGAGCTT
GTCGCGGTTGGCCGCATCGGTGACCAGCACCTTGCTGCCGGCGGTCGCCACGCGGTGTTCGATGGCCTTCGG
GCCGAAGGCGGTGAACAGCGGCTGGTACACCGCGCCCAGGCGCCAGGCGCCGAGGATGGTGACCAGCAGCTC
GGGCGTGCGCGGCAACAGGCCGGCGACGCAATCGCCCGGGCGTACGCCCTGGGCCTGGAGGAAATTGGCGAA
ACGTCCGGAGAGCGCTTTCAGCTCGCTGAAGGTATAGCTGGCGCGACTGCCATCCTTGCCCTCCCAGAACAA
CGCGATCCGACCCGGCAGGGCATGCCGGTCGCAGCATTCGACGCAGGCGTTGAGCGCCTGGAGCGTGCCGGA
AAGCGTGGCGGCGGCGGTCCGCTGCAAGTCGAACCCGGCGGCAGTGGTGGCGTAGTCGCGCATTGCAGGACT
CCTCGGCTTGTTTTTGTATGGAGTAGCCGGAATCTTCACGCCGTGGCTGGCGCGGGGCAATGTCGAAAGGCT
TCAATCTGCCTGAGCGGTTTGGACAATCCGGGCTGGCTGCCTGTCCCCCCGAACCGTTCGCGACATACCGCG
GATGATGCTGCGCGGCATTCGCCCTATCGACGGCCGAGCGTTTCGGACAAGACGCCTGACGACTCGGCCGAC
GCGGTTTCCGCCGCGACCTGCGCCCGGTACTGCCCGGGGGTCAAGCCGGTCCACTTCTTGAACGCCTTGTGG
AACGCGCTGCCATCGGCGAAGCCCAGCTCCAGCGCCAGTTCGGCGAAATTCGCCGCGCCGGCGTCCAGCCGC
GCGATGGCCAGGTCGCGGCGGACCTGGTCCTTCAGCGCCTGGTAG
Translation:
MTRNTRFSIRTSFSPAESVRGGRPWGRLALPGDLLVAQEKALDLAAGGLRQFLEELDLPRVGVRRQALAHVS
LQFVRQFRRRPVAGAEHDEGLDQFGALRVGLADHRRLHHCRVFDQRALHIERADPVARGGNDVVGAADEADA
AVFVEFDGIAAQVVVADEGCGFQALVAGEPHQRRTPPVEGEDARLAGRQFVEIVVQHYHPVPGTGESGGADP
HRMRQGMVVAQHHAQLGLPVMVVDGGAEPVGEPADHLRRQRLAGAADRAQAPLQRSFRGRAGGHQQAIGGGR
SGEVGDAVVTDDPAGAFHAERPFVEGGRMAHGEGTGDSVVEAVGPARIGEVPEGVLGAQVHRLAQVADEGED
RLERHRHRFGQAGGAGGEHHQERILAAARNRLEFGRIALQLGPEAEIAATDALPLRSADGDGQRRIGEFVEL
VAVGRIGDQHLAAGGRHAVFDGLRAEGGEQRLVHRAQAPGAEDGDQQLGRARQQAGDAIARAYALGLEEIGE
TSGERFQLAEGIAGATAILALPEQRDPTRQGMPVAAFDAGVERLERAGKRGGGGPLQVEPGGSGGVVAHCRT
PRLVFVWSSRNLHAVAGAGQCRKASICLSGLDNPGWLPVPPNRSRHTADDAARHSPYRRPSVSDKTPDDSAD
AVSAATCARYCPGVKPVHFLNALWNALPSAKPSSSASSAKFAAPASSRAMARSRRTWSFSAW*
AnnotationID:6059GeneID:6058
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 22:10:25
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15900
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29237
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49060How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2213842Stop: 2215974
Length: 2133
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGACCAGGAACACTCGATTTTCGATACGCACGTCGTTTTCTCCTGCTGAATCAGTTCGCGGCGGCCGCCCG
TGGGGCCGCCTCGCGTTGCCGGGCGATCTCCTGGTTGCGCAGGAGAAAGCGCTGGATCTTGCCGCTGGGGGT
CTTCGGCAGTTCCTCGAGGAACTCGATCTCCCGCGGGTAGGCGTGCGCCGACAGGCGCTGGCGCACGTATCG
CTGCAGTTCGTCCGCCAGTTCCGGCGTCGGCCGGTGGCCGGCGCAGAGCACGACGAAGGCCTTGACCAGTTC
GGTGCGCTCCGGGTCGGGCTTGCCGATCACCGCCGCCTCCATCACTGCCGGGTGTTCGATCAGCGCGCTCTC
CACATCGAACGGGCCGACCCGGTAGCCAGAGGTGGTAATGACGTCGTCGGCGCGGCCGACGAAGCTGATGCT
gcCGTCTTCGTTGAGTTCGACGGTATCGCCGCTCAGGTAGTAGTCGCCGACGAAGGCTGCGGTTTCCAGGCC
CTGGTAGCCGGGGAACCACATCAGCGGCGAACGCCGCCGGTCGAGGGCGAGGATGCCCGGCTGGCCGGGCGG
CAGTTCGTTGAGATCGTCGTCCAGCACTACCACCCGGTGCCCGGGACAGGCGAATCCGGCGGCGCCGACCCG
CACCGGATGCGCCAGGGCATGGTGGTTGCACAGCACCATGCCCAGCTCGGTCTGCCCGTAATGGTCGTGGAT
GGTGGTGCCGAGCCTGTCGGCGAACCAGCGGATCACCTCCGGCGTCAACGGCTCGCCGGCGCTGCTGACCGC
GCGCAGGCGCCCCTTCAGCGCAGTTTCCGCGGCCGCGCCGGCGGCCATCAGCAGGCGATAGGCGGTGGGCGA
TCCGGCGAGGTTGGTGATGCCGTAGTCACGGATGATCCGGCAGGTGCTTTCCACGCTGAACGGCCCTTCGTA
GAAGGTGGTCGGATGGCCCATGGCGAGGGGACCGGCGACAGCGTAGTAGAGGCCGTAGGCCCAGCCCGGATC
GGCGAGGTTCCAGAAGGCGTCCTCGGGGCGCAGGTCCACCGCCTCGCGCAGGTAGCCGACGAAGGCGAGGAT
CGCCTTGAGCGGCACCGGCACCGGTTTGGCCAGGCCGGTGGTGCCGGAGGTGAACATCATCAGGAACGGATC
CTCGCCGCTGCGCGGAACCGGCTCGAATTCGGCCGGATAGCGCTCCAGCTCGGCCCAGAAGCTGAAATCGCC
GCGACGGATGCCCTGCCCCTTCGGTCCGCCGACGGTGACGGCCAGAGGCGGATCGGCGAGTTCGTCGAGCTT
GTCGCGGTTGGCCGCATCGGTGACCAGCACCTTGCTGCCGGCGGTCGCCACGCGGTGTTCGATGGCCTTCGG
GCCGAAGGCGGTGAACAGCGGCTGGTACACCGCGCCCAGGCGCCAGGCGCCGAGGATGGTGACCAGCAGCTC
GGGCGTGCGCGGCAACAGGCCGGCGACGCAATCGCCCGGGCGTACGCCCTGGGCCTGGAGGAAATTGGCGAA
ACGTCCGGAGAGCGCTTTCAGCTCGCTGAAGGTATAGCTGGCGCGACTGCCATCCTTGCCCTCCCAGAACAA
CGCGATCCGACCCGGCAGGGCATGCCGGTCGCAGCATTCGACGCAGGCGTTGAGCGCCTGGAGCGTGCCGGA
AAGCGTGGCGGCGGCGGTCCGCTGCAAGTCGAACCCGGCGGCAGTGGTGGCGTAGTCGCGCATTGCAGGACT
CCTCGGCTTGTTTTTGTATGGAGTAGCCGGAATCTTCACGCCGTGGCTGGCGCGGGGCAATGTCGAAAGGCT
TCAATCTGCCTGAGCGGTTTGGACAATCCGGGCTGGCTGCCTGTCCCCCCGAACCGTTCGCGACATACCGCG
GATGATGCTGCGCGGCATTCGCCCTATCGACGGCCGAGCGTTTCGGACAAGACGCCTGACGACTCGGCCGAC
GCGGTTTCCGCCGCGACCTGCGCCCGGTACTGCCCGGGGGTCAAGCCGGTCCACTTCTTGAACGCCTTGTGG
AACGCGCTGCCATCGGCGAAGCCCAGCTCCAGCGCCAGTTCGGCGAAATTCGCCGCGCCGGCGTCCAGCCGC
GCGATGGCCAGGTCGCGGCGGACCTGGTCCTTCAGCGCCTGGTAG