ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6046

TrivialName: PA14_31910

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_31910

PAO1 Ortholog Locus:

Sequence Length: 1632

Protein Length: 543

Start: 2781123

Stop: 2779492

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK22724.1| (AE005749) hypothetical protein [Caulobacter crescentus CB15] Identities = 145/502 (28%), Positives = 197/502 (39%), Gaps = 84/502 (16%)

Sequence:

GTGTCATGCAAGCGCAATAGCGGGGAAAGGCATTCGTCAGGAACAGGCAGCGAGAAGAACTCAGGGCGAAGG
CGGCAGGCCCTCCTCGACCCGGCCGAGCCGCTCGTCGGTCCGCTCGATGTCGGCGCTGTCCCAGCCGCCGCC
CATTGCCGCGATCAACTGGACGCTGGCGGTCAGGCGGCTGCCGAGCAGGGTCAGCACGGTGCGTTCGTTGCT
CAGCGCGGTGGCCTGGTTGGTGACCACGTCGGTGTAGTCGACGGTGCCGGCCTTGTACTGGTTCTCGGCCAG
GCGCAGTGCCTCGCGGGCCGACTCCAGGGCTTCGCGCTGCACCCCGCTCTCCTCGTCGAGGACGCTCAATTG
CACCAGGTAGTCCTCCACCTCGCGGAAACCGTCGAGCACGGTCTGCCGGTAGGTCGCCACGGTCTGGTCGTA
GGTCGCCTCGGCCTGGTCCACCTGGGAGCCGATCAGGCCGCCGTCGAACAGGGTCATGGCGAACTGCGGGCC
GATCGACCAGAAGCGGTTCGGCGTGCTGATCCAGTTGCTCAGGCTGCCGCTGCGGTAGCCGCCGGCGGCGCT
CAGGGTGAGGTCGGGGAAATAGGCGGCCTTGGCCACGCCGATCTGGGCATTGGCGGAAATCACCTTGCGTTC
CGCCGAGGCGATGTCCGGCCGTCGTTCGAGCAATTGCGACGGCACCACTGCCGGCAGGTCCGGCAGCTTCGG
CACGCTCGCCACCGGCGGCAGGTTGAATTGCGCCGGCGGCAGGCCGACCAGCACGGCGATGGCGTGCTCCAG
CTGGGCGCGCTGGTACTTCAGGTCGATGGCCTGGGCCTGGGTGCTTTTCAGCTGGGTGCGGGCCTGGGCCAC
GTCGGCCCTGGTGACGATGCCGGCGCGGTATTTGTTCTCGGCCACCTTCAGCGAACGCTCGTAGGCCGTCAC
CGTGTCGTTGAGCAGGCGGATCTGTTCGTCCATCACCCGCAGTTGCAGGTAGTTCTGCGCCAGTTGCGACTG
CTGGCTGAGGCGCACCGCGGCGAGGTCGGCGGCGCTGGCATGCAGGCTCGCCTGGTTGGCCTCCAGTTGCCG
GCGCAGCTTGCCCCAGAGGTCGACCTCCCAGCTGACACTGAGGTTGGTCGAGTAGCTGGTACTGATCGCGCC
AGAGCCGCCGCTGCTCACCGTCGAGCCTCCCGGCAGCAACACGGTGCTATCGCCGCCGCCCTGGCCGCTGCG
GGTCTTGCCCACGTTGCCGGTGATCGACGGGAAGAACGCCGCCCGCGCGCCGCGCACCAGCGCCTCGGCCTG
GCGGAACTGCGCCACCGACTGGGCCAGGGTCTGGTTGGAACGTTCCAGGTGCATCTGCAGGTCGTTCAGGGT
CTGGTCGCCGTACAGCTCCCACCAGGCGCCGCGCTGGAACACGTCGCGCGGCTCGGCGCGGCGCCAGCCTTC
GGCTTCCTTGAATTCGGCGGGCACCGCCAGGTCCGGTCGCTGGTAGTCGGGGCCGATGGCGCAGCCGCCGAG
GGCGGCGACCAGGGCCAGGGCGAGCAACGAGGGGGTGTGTTTCATAGGGGTGTCTCCAGCGCACCGTCCGTG
CGTACGCCGCGTTTCTGGTTGACCCAGTGGCGCAGGCGGTCGAGATAG

Translation:

MSCKRNSGERHSSGTGSEKNSGRRRQALLDPAEPLVGPLDVGAVPAAAHCRDQLDAGGQAAAEQGQHGAFVA
QRGGLVGDHVGVVDGAGLVLVLGQAQCLAGRLQGFALHPALLVEDAQLHQVVLHLAETVEHGLPVGRHGLVV
GRLGLVHLGADQAAVEQGHGELRADRPEAVRRADPVAQAAAAVAAGGAQGEVGEIGGLGHADLGIGGNHLAF
RRGDVRPSFEQLRRHHCRQVRQLRHARHRRQVELRRRQADQHGDGVLQLGALVLQVDGLGLGAFQLGAGLGH
VGPGDDAGAVFVLGHLQRTLVGRHRVVEQADLFVHHPQLQVVLRQLRLLAEAHRGEVGGAGMQARLVGLQLP
AQLAPEVDLPADTEVGRVAGTDRARAAAAHRRASRQQHGAIAAALAAAGLAHVAGDRREERRPRAAHQRLGL
AELRHRLGQGLVGTFQVHLQVVQGLVAVQLPPGAALEHVARLGAAPAFGFLEFGGHRQVRSLVVGADGAAAE
GGDQGQGEQRGGVFHRGVSSAPSVRTPRFWLTQWRRRSR*

AnnotationID:6047 GeneID:6046

AnnotatorUID: diggins

Modification Date/Time: 2005-03-06 18:06:08

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:15894

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29213

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:6046

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

198151 gb|AAQ60405.1| (AE016919) hypothetical protein CV2735 [Chromobacterium violaceum ATCC 12472] 548 36.49 42.88 94 640.0

GC ORFID: `49048`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2172803`	Stop: `2174434`
Length: `1632`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGTCATGCAAGCGCAATAGCGGGGAAAGGCATTCGTCAGGAACAGGCAGCGAGAAGAACTCAGGGCGAAGG CGGCAGGCCCTCCTCGACCCGGCCGAGCCGCTCGTCGGTCCGCTCGATGTCGGCGCTGTCCCAGCCGCCGCC CATTGCCGCGATCAACTGGACGCTGGCGGTCAGGCGGCTGCCGAGCAGGGTCAGCACGGTGCGTTCGTTGCT CAGCGCGGTGGCCTGGTTGGTGACCACGTCGGTGTAGTCGACGGTGCCGGCCTTGTACTGGTTCTCGGCCAG GCGCAGTGCCTCGCGGGCCGACTCCAGGGCTTCGCGCTGCACCCCGCTCTCCTCGTCGAGGACGCTCAATTG CACCAGGTAGTCCTCCACCTCGCGGAAACCGTCGAGCACGGTCTGCCGGTAGGTCGCCACGGTCTGGTCGTA GGTCGCCTCGGCCTGGTCCACCTGGGAGCCGATCAGGCCGCCGTCGAACAGGGTCATGGCGAACTGCGGGCC GATCGACCAGAAGCGGTTCGGCGTGCTGATCCAGTTGCTCAGGCTGCCGCTGCGGTAGCCGCCGGCGGCGCT CAGGGTGAGGTCGGGGAAATAGGCGGCCTTGGCCACGCCGATCTGGGCATTGGCGGAAATCACCTTGCGTTC CGCCGAGGCGATGTCCGGCCGTCGTTCGAGCAATTGCGACGGCACCACTGCCGGCAGGTCCGGCAGCTTCGG CACGCTCGCCACCGGCGGCAGGTTGAATTGCGCCGGCGGCAGGCCGACCAGCACGGCGATGGCGTGCTCCAG CTGGGCGCGCTGGTACTTCAGGTCGATGGCCTGGGCCTGGGTGCTTTTCAGCTGGGTGCGGGCCTGGGCCAC GTCGGCCCTGGTGACGATGCCGGCGCGGTATTTGTTCTCGGCCACCTTCAGCGAACGCTCGTAGGCCGTCAC CGTGTCGTTGAGCAGGCGGATCTGTTCGTCCATCACCCGCAGTTGCAGGTAGTTCTGCGCCAGTTGCGACTG CTGGCTGAGGCGCACCGCGGCGAGGTCGGCGGCGCTGGCATGCAGGCTCGCCTGGTTGGCCTCCAGTTGCCG GCGCAGCTTGCCCCAGAGGTCGACCTCCCAGCTGACACTGAGGTTGGTCGAGTAGCTGGTACTGATCGCGCC AGAGCCGCCGCTGCTCACCGTCGAGCCTCCCGGCAGCAACACGGTGCTATCGCCGCCGCCCTGGCCGCTGCG GGTCTTGCCCACGTTGCCGGTGATCGACGGGAAGAACGCCGCCCGCGCGCCGCGCACCAGCGCCTCGGCCTG GCGGAACTGCGCCACCGACTGGGCCAGGGTCTGGTTGGAACGTTCCAGGTGCATCTGCAGGTCGTTCAGGGT CTGGTCGCCGTACAGCTCCCACCAGGCGCCGCGCTGGAACACGTCGCGCGGCTCGGCGCGGCGCCAGCCTTC GGCTTCCTTGAATTCGGCGGGCACCGCCAGGTCCGGTCGCTGGTAGTCGGGGCCGATGGCGCAGCCGCCGAG GGCGGCGACCAGGGCCAGGGCGAGCAACGAGGGGGTGTGTTTCATAGGGGTGTCTCCAGCGCACCGTCCGTG CGTACGCCGCGTTTCTGGTTGACCCAGTGGCGCAGGCGGTCGAGATAG