ViewGene

Locus Name:
GeneID:
Location:

GeneID:6041
TrivialName: PA14_32000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32000
PAO1 Ortholog Locus:
Sequence Length:2193
Protein Length:730
Start: 2788983
Stop: 2786791
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:TRUE
Comments:
Homology: gb|AAK23765.1| (AE005853) hypothetical protein [Caulobacter crescentus CB15]
Identities = 83/330 (25%), Positives = 118/330 (35%), Gaps = 67/330 (20%)
Sequence:
TTGCAGCACCTTGgAGATCTTCTCCGCAGTGTCGttGAGCACCTGCATGtCGTCGccgaAGAcCTTCACCGC
GACGTCGCTGCGCACCCCgGAGATCAGTtcgTTGAagcgcAACTGGATCGGCTGGGAGAACTCGTAGACGCT
GCCCGGCACCTCAAGGGCCGCGGCCTGCAATTCTTCCAGCAGCGCCTCCCGCGACTTCTTCGGGTCCGGCCA
CTGGCTCTGCGGCTTGAGCATCACGTAGCTGTCGGAGGCGTTCGGCGGCATCAGGTCGGAGGCAATCTCGGC
GGTCCCGGTGCGGGCGAAGACCCGCTCGATCTCCGGGAACTTGCCCATCAGCTTCTTCTCCAGGGTCTGCTG
CATCTCGACCGACTGGGTCAGGCTGGTGCCCGGCACCCGCAGGCCCTGCATGGCGAAGTCGCCCTCGCTGAG
GCTGGGAATGAACTCGCTGCCCATCCGCGAGGCCACCAGCGCGGTGAGCAGGATCGCGCCGAGGGCACCGCC
GACCACCAGCGCGCGGTGTCCGAGCACCCAGCGCAGCGCCGGTTCGTAGGCCAGACGCGCGCGGCGCATGAC
GAAGTTCTCCTCCTCCTTGACCTTGCCGGTGATGAACAGCGCGATCGCCGCCGGGACGAAGGTCACCGAGAG
GATCATCGCGCCAAGCAGCGCGGTGACCACGGTGAACGCCATCGGGTGGAACATCTTCCCCTCGACCCCGGT
GAGGGCGAAGATCGGCAGGTACACCACCATGATGATGATCTGGCCGAAGATCAGCGCCCGGCGCGCCTCCCT
GGACGCGGCGAAGACCTCGTGGAAACGTTCCGCGCGGGTCAGCTGGCGGCCGTGATGGGCCTGGGCATGGGC
CAGGCGGCGGATGGCGTTCTCGACGATCACCACGGCGCCGTCGACGATGATGCCGAAGTCCAGCGCGCCGAG
GCTCATCAGGTTGGCGCTGACCCTGTTGCCGACCATCCCGGTGAAGGTGAACAGCATCGACAGCGGGATGAT
GGTGGCGGTGATCAGCGCCGCGCGGATGTTGCCGAGGAACAGGAAGAGCACCGCGATCACCAGCGCCGCGcc
tCCACCAGggttcttcttcacgtgggcactgtcctagtcatgcagggtggtgcggtcgtagacggtgatcgc
agtgaccccctgggcagggTCCGGTtgatctcctccaggcgctggcagaccgcgtgggccactttcccgGCT
GTTCTCGCCGATCAGCATGAACACCGTGCCGAGCACCACTTCGCGGCCGTTCTCGGTGGCCGCGCCGGTGCG
CAGCTCCTTGCCCAGGCCGACCTCGGCGACGTCGCGGATACGGATCGGCACGCCGTCGACGTTGGAAACGAT
GATCCCGCGGATATCGTCCATGTCCTTGACCTGGCCCGGCGCGCGGATCAGCAACTGCTCGCCGCGCCGCTC
GATGTAGCCGGCGCCGACGTTCTCGTTGTTGCGCAGCACGGCGTTCTGCAGGTCGCCGAGGGTCAGCTTGTA
GGCCGCGAGCTTCTTCGGATCCGGGGCGATGAGGAATTGCTTAGCGTAGCCGCCGATGGTGTTGATCTCGGC
CACGCCCTTCACGTTGCGCAACTGCGGACGGATGATCCAGTCCTGGATGGTGCGCAGGTCGGTGGGCGTGTA
GGCGCTGCCGTCCTCCTTGGTCGCACCCTCCTCGGCCTCTACCGTCCACAGGTAGATCTCGCCGAGACCGGT
GGAGATCGGCCCGAGGGTCGGCGAGATGTCTTCCGGCAGTTGCTCGCGCGCCGTGCTCAGGCGTTCGTTGAC
CTGCTGGCGGGCGAAGTAGATGTCGGTGCCTTCCTCGAAGATCACCGTCACCTGGGAAATCCCCGGCCGCGA
CAGCGAACGGGTTTCCTGCAAACCCGGCAGGCCGGCCATGACGGTCTCCACCGGGTAGGTGATCCGCTGCTC
CACTTCCAGCGGCGAGTAGCCGGGGGCGGCGGTATTGATCTGCACCTGGACGTTGGTGATGTCCGGGACCGC
GTCGATGGACAGCTTCTGGTAGCTGCCAATGCCGACCCCGGCCATCCCCAGCACCGCCAGCAGGACCAGCCA
GCGTTGCTCGATGGCGAATTGGATGATGCGTTCGAACATGCGAAGACTCCTGGAGCGGGACTCAGTGACCGT
GTTCCGCCGAGCCCTTGCCCAGTTCGGATTTGA
Translation:
MQHLGDLLRSVVEHLHVVAEDLHRDVAAHPGDQFVEAQLDRLGELVDAARHLKGRGLQFFQQRLPRLLRVRP
LALRLEHHVAVGGVRRHQVGGNLGGPGAGEDPLDLRELAHQLLLQGLLHLDRLGQAGARHPQALHGEVALAE
AGNELAAHPRGHQRGEQDRAEGTADHQRAVSEHPAQRRFVGQTRAAHDEVLLLLDLAGDEQRDRRRDEGHRE
DHRAKQRGDHGERHRVEHLPLDPGEGEDRQVHHHDDDLAEDQRPARLPGRGEDLVETFRAGQLAAVMGLGMG
QAADGVLDDHHGAVDDDAEVQRAEAHQVGADPVADHPGEGEQHRQRDDGGGDQRRADVAEEQEEHRDHQRRA
STRVLLHVGTVLVMQGGAVVDGDRSDPLGRVRLISSRRWQTAWATFPAVLADQHEHRAEHHFAAVLGGRAGA
QLLAQADLGDVADTDRHAVDVGNDDPADIVHVLDLARRADQQLLAAPLDVAGADVLVVAQHGVLQVAEGQLV
GRELLRIRGDEELLSVAADGVDLGHALHVAQLRTDDPVLDGAQVGGRVGAAVLLGRTLLGLYRPQVDLAETG
GDRPEGRRDVFRQLLARRAQAFVDLLAGEVDVGAFLEDHRHLGNPRPRQRTGFLQTRQAGHDGLHRVGDPLL
HFQRRVAGGGGIDLHLDVGDVRDRVDGQLLVAANADPGHPQHRQQDQPALLDGELDDAFEHAKTPGAGLSDR
VPPSPCPVRI*
AnnotationID:6042GeneID:6041
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 18:06:45
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15891
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29203
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49043How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2164943Stop: 2167135
Length: 2193
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCAGCACCTTGgAGATCTTCTCCGCAGTGTCGttGAGCACCTGCATGtCGTCGccgaAGAcCTTCACCGC
GACGTCGCTGCGCACCCCgGAGATCAGTtcgTTGAagcgcAACTGGATCGGCTGGGAGAACTCGTAGACGCT
GCCCGGCACCTCAAGGGCCGCGGCCTGCAATTCTTCCAGCAGCGCCTCCCGCGACTTCTTCGGGTCCGGCCA
CTGGCTCTGCGGCTTGAGCATCACGTAGCTGTCGGAGGCGTTCGGCGGCATCAGGTCGGAGGCAATCTCGGC
GGTCCCGGTGCGGGCGAAGACCCGCTCGATCTCCGGGAACTTGCCCATCAGCTTCTTCTCCAGGGTCTGCTG
CATCTCGACCGACTGGGTCAGGCTGGTGCCCGGCACCCGCAGGCCCTGCATGGCGAAGTCGCCCTCGCTGAG
GCTGGGAATGAACTCGCTGCCCATCCGCGAGGCCACCAGCGCGGTGAGCAGGATCGCGCCGAGGGCACCGCC
GACCACCAGCGCGCGGTGTCCGAGCACCCAGCGCAGCGCCGGTTCGTAGGCCAGACGCGCGCGGCGCATGAC
GAAGTTCTCCTCCTCCTTGACCTTGCCGGTGATGAACAGCGCGATCGCCGCCGGGACGAAGGTCACCGAGAG
GATCATCGCGCCAAGCAGCGCGGTGACCACGGTGAACGCCATCGGGTGGAACATCTTCCCCTCGACCCCGGT
GAGGGCGAAGATCGGCAGGTACACCACCATGATGATGATCTGGCCGAAGATCAGCGCCCGGCGCGCCTCCCT
GGACGCGGCGAAGACCTCGTGGAAACGTTCCGCGCGGGTCAGCTGGCGGCCGTGATGGGCCTGGGCATGGGC
CAGGCGGCGGATGGCGTTCTCGACGATCACCACGGCGCCGTCGACGATGATGCCGAAGTCCAGCGCGCCGAG
GCTCATCAGGTTGGCGCTGACCCTGTTGCCGACCATCCCGGTGAAGGTGAACAGCATCGACAGCGGGATGAT
GGTGGCGGTGATCAGCGCCGCGCGGATGTTGCCGAGGAACAGGAAGAGCACCGCGATCACCAGCGCCGCGcc
tCCACCAGggttcttcttcacgtgggcactgtcctagtcatgcagggtggtgcggtcgtagacggtgatcgc
agtgaccccctgggcagggTCCGGTtgatctcctccaggcgctggcagaccgcgtgggccactttcccgGCT
GTTCTCGCCGATCAGCATGAACACCGTGCCGAGCACCACTTCGCGGCCGTTCTCGGTGGCCGCGCCGGTGCG
CAGCTCCTTGCCCAGGCCGACCTCGGCGACGTCGCGGATACGGATCGGCACGCCGTCGACGTTGGAAACGAT
GATCCCGCGGATATCGTCCATGTCCTTGACCTGGCCCGGCGCGCGGATCAGCAACTGCTCGCCGCGCCGCTC
GATGTAGCCGGCGCCGACGTTCTCGTTGTTGCGCAGCACGGCGTTCTGCAGGTCGCCGAGGGTCAGCTTGTA
GGCCGCGAGCTTCTTCGGATCCGGGGCGATGAGGAATTGCTTAGCGTAGCCGCCGATGGTGTTGATCTCGGC
CACGCCCTTCACGTTGCGCAACTGCGGACGGATGATCCAGTCCTGGATGGTGCGCAGGTCGGTGGGCGTGTA
GGCGCTGCCGTCCTCCTTGGTCGCACCCTCCTCGGCCTCTACCGTCCACAGGTAGATCTCGCCGAGACCGGT
GGAGATCGGCCCGAGGGTCGGCGAGATGTCTTCCGGCAGTTGCTCGCGCGCCGTGCTCAGGCGTTCGTTGAC
CTGCTGGCGGGCGAAGTAGATGTCGGTGCCTTCCTCGAAGATCACCGTCACCTGGGAAATCCCCGGCCGCGA
CAGCGAACGGGTTTCCTGCAAACCCGGCAGGCCGGCCATGACGGTCTCCACCGGGTAGGTGATCCGCTGCTC
CACTTCCAGCGGCGAGTAGCCGGGGGCGGCGGTATTGATCTGCACCTGGACGTTGGTGATGTCCGGGACCGC
GTCGATGGACAGCTTCTGGTAGCTGCCAATGCCGACCCCGGCCATCCCCAGCACCGCCAGCAGGACCAGCCA
GCGTTGCTCGATGGCGAATTGGATGATGCGTTCGAACATGCGAAGACTCCTGGAGCGGGACTCAGTGACCGT
GTTCCGCCGAGCCCTTGCCCAGTTCGGATTTGA