ViewGene
Locus Name:
GeneID:
Location:

GeneID:604
TrivialName: PA14_60800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60800
PAO1 Ortholog Locus:PA4595
Sequence Length:1665
Protein Length:554
Start: 5421040
Stop: 5419376
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07983.1|AE004873_5 (AE004873) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 552/554 (99%), Positives = 554/554 (100%)
Sequence:
TTGGCTCAGTACGTCTACACCATGCATCGGGTCGGCAAGATCGTTCCGCCCAAGCGTGAAATCCTCAAGGAC
ATCTCCCTGTCGTTCTTCCCCGGCGCCAAGATCGGCGTGCTCGGCCTGAACGGCGCGGGCAAGTCCACCCTG
CTGCGGATCATGGCCGGCGTCGACACCGAGATCGAAGGCGAGGCCCGGCCGATGCCGGGGATCAACGTCGGC
TACCTGCCGCAGGAGCCCAAGCTGGACCCGCAGGCCACCGTGCGCGACATCGTCGAAGAGGCCGTCGGCCAG
ATCAAGCAGGCCCAGGCGCGGCTGGACGAGGTCTATGCCGCCTATGCCGAGCCGGATGCCGACTTCGACGCC
CTGGCCGCCGAGCAGGCCAAGCTGGAGGCGATCCTCCAGGCATCCGACGGACACAACCTGGAACGCCAACTG
GAAGTCGCCGCCGACGCCCTGCGCCTGCCGCCGTGGGATGCCAAGGTCGAGCACCTGTCCGGCGGCGAAAAG
CGCCGCGTAGCGCTGTGCCGCCTGCTGCTGTCGGCTCCCGACATGCTGCTGCTGGACGAACCGACCAACCAC
CTGGACGCCGACTCGGTGGCCTGGCTGGAGCATTTCCTGCACGACTTCCCCGGCACCGTGGTGGCGATCACC
CACGACCGCTACTTCCTCGACAACGTCGCCGGCTGGATCCTCGAACTCGACCGTGGCCATGGCATCCCGTTC
GAAGGCAACTACTCCGGCTGGCTGGAATCCAAGGCCGCCCGCCTGGCCCAGGAAGCCAAGCAGGAAGCCTCC
CACGCCAAGGCCATGAAGGCCGAGCTGGAGTGGGTACGCCAGGGCGCCAAGGGCCGCCAGGCCAAGTCCAAG
GCGCGCCTGCAGCGCTTCGAGGAACTGCAGTCGCAGGAATTCCAGAAGCGCAGCGAGACCAACGAGATCTAC
ATCCCGGCCGGTCCGCGCCTGGGCGACAAGGTCATCGAACTGCACAACGTGACCAAGGGCTACGGCGACCGC
GTGCTGATCGACAACCTGTCCCTGAGCATTCCCAAGGGCGCTATCGTCGGTGTGATCGGCGGCAACGGCGCG
GGCAAGTCGACCCTGTTCCGCATGCTCACCGGCAAGGAGCAGCCGGACTCCGGCACCATCGAGATCGGCGAG
ACCGTGCAGATCGCCAGCGTCGACCAGAGCCGTGACAGCCTGGAAGGCAACAAGACCGTGTGGGAGCAGGTT
TCCGACGGTTTCGAGCAGATCAAGATCGGCAACTACGAAGTCCCGTCGCGCAGCTATGTCGGTCGCTTCAAC
TTCAAGGGCGCCGACCAGCAGAAGTTCGTCAAGGACCTCTCCGGCGGTGAGCGTGGCCGTCTGCACCTGGCC
CTGACCCTGAAGCAGGGTGGCAACGTGTTGCTGCTCGACGAACCGTCCAACGACCTCGACGTGGAAACCCTG
CGTGCGCTGGAAGAGGCGCTGCTGGACTTCCCCGGCTCCGCCATCGTGATCTCCCACGACCGCTGGTTCCTC
GACCGGATCGCCACCCACATCCTCTCCTACGAGGACGATGGCAAGGTGACCTTCTTCGAAGGCAACTACACC
GAGTTCGAGGCCGACCGCAAGAAGCGCCTGGGCGACGCCGCGGCCCAGCCGCACCGCGTGCGCTACAAGAAA
CTGGCGTAA
Translation:
MAQYVYTMHRVGKIVPPKREILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDTEIEGEARPMPGINVG
YLPQEPKLDPQATVRDIVEEAVGQIKQAQARLDEVYAAYAEPDADFDALAAEQAKLEAILQASDGHNLERQL
EVAADALRLPPWDAKVEHLSGGEKRRVALCRLLLSAPDMLLLDEPTNHLDADSVAWLEHFLHDFPGTVVAIT
HDRYFLDNVAGWILELDRGHGIPFEGNYSGWLESKAARLAQEAKQEASHAKAMKAELEWVRQGAKGRQAKSK
ARLQRFEELQSQEFQKRSETNEIYIPAGPRLGDKVIELHNVTKGYGDRVLIDNLSLSIPKGAIVGVIGGNGA
GKSTLFRMLTGKEQPDSGTIEIGETVQIASVDQSRDSLEGNKTVWEQVSDGFEQIKIGNYEVPSRSYVGRFN
FKGADQQKFVKDLSGGERGRLHLALTLKQGGNVLLLDEPSNDLDVETLRALEEALLDFPGSAIVISHDRWFL
DRIATHILSYEDDGKVTFFEGNYTEFEADRKKRLGDAAAQPHRVRYKKLA*
AnnotationID:613GeneID:604
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 06:06:23
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter, ATP-binding protein
Cell Localization:()
Synonyms:PA4595
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0488,KOG0927
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58048.1| (AE016872) ABC transporter, ATP-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 563

 Score =  972 bits (2513), Expect = 0.0
 Identities = 477/551 (86%), Positives = 520/551 (94%)

>gb|AAC22902.1| (U32805) ABC transporter, ATP-binding protein [Haemophilus
           influenzae Rd]
          Length = 556

 Score =  874 bits (2259), Expect = 0.0
 Identities = 423/553 (76%), Positives = 485/553 (87%)

>gb|AAG59571.1|AE005670_4 (AE005670) putative ATP-binding component of ABC transport system
           [Escherichia coli O157:H7 EDL933]
          Length = 555

 Score =  855 bits (2209), Expect = 0.0
 Identities = 415/554 (74%), Positives = 483/554 (87%)






 
Structural Features:
COG0488, Uup, ATPase components of ABC transporters with 
duplicated ATPase domains 
CD-Length = 530 residues, 100.0% aligned
Score =  569 bits (1469), Expect = 4e-163
Identities = 258/543 (47%), Positives = 348/543 (64%), Gaps = 21/543 (3%)

KOG0927, Predicted transporter (ABC superfamily) 
CD-Length = 614 residues,  84.5% aligned
Score =  250 bits (640), Expect = 6e-67
Identities = 158/535 (29%), Positives = 262/535 (48%), Gaps = 27/535 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14173




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18353




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31626




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:604_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:604
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1028
                           PA4595_tr
                           translation of PA4595
                           554
                           99.63
                           99.99
                           0
                           2840.0
     

     
     
40010
                           gb|AAG07983.1|AE004873_5
                           (AE004873) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           554
                           99.45
                           99.99
                           0
                           2838.0
     

     
     
40011
                           gb|AAN66299.1|AE016258_5
                           (AE016776) ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           555
                           87.20
                           94.59
                           1
                           2550.0
     

     
     
40012
                           gb|AAO58048.1|
                           (AE016872) ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           563
                           84.72
                           92.36
                           9
                           2512.0
     

     
     
40013
                           gb|AAK02509.1|
                           (AE006078) unknown [Pasteurella multocida]
                           556
                           76.43
                           87.76
                           2
                           2267.0
     

     






      

          
GC ORFID: 43606How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4595Glimmer Score: 

          
Start: 4684720Stop: 4683056

          
Length: 1665


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4595 translation of PA4595Homolog Bit Score 1098.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5411 (ORF: BLASTX 974.0), t_PA4595 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGGCTCAGTACGTCTACACCATGCATCGGGTCGGCAAGATCGTTCCGCCCAAGCGTGAAATCCTCAAGGAC 
ATCTCCCTGTCGTTCTTCCCCGGCGCCAAGATCGGCGTGCTCGGCCTGAACGGCGCGGGCAAGTCCACCCTG 
CTGCGGATCATGGCCGGCGTCGACACCGAGATCGAAGGCGAGGCCCGGCCGATGCCGGGGATCAACGTCGGC 
TACCTGCCGCAGGAGCCCAAGCTGGACCCGCAGGCCACCGTGCGCGACATCGTCGAAGAGGCCGTCGGCCAG 
ATCAAGCAGGCCCAGGCGCGGCTGGACGAGGTCTATGCCGCCTATGCCGAGCCGGATGCCGACTTCGACGCC 
CTGGCCGCCGAGCAGGCCAAGCTGGAGGCGATCCTCCAGGCATCCGACGGACACAACCTGGAACGCCAACTG 
GAAGTCGCCGCCGACGCCCTGCGCCTGCCGCCGTGGGATGCCAAGGTCGAGCACCTGTCCGGCGGCGAAAAG 
CGCCGCGTAGCGCTGTGCCGCCTGCTGCTGTCGGCTCCCGACATGCTGCTGCTGGACGAACCGACCAACCAC 
CTGGACGCCGACTCGGTGGCCTGGCTGGAGCATTTCCTGCACGACTTCCCCGGCACCGTGGTGGCGATCACC 
CACGACCGCTACTTCCTCGACAACGTCGCCGGCTGGATCCTCGAACTCGACCGTGGCCATGGCATCCCGTTC 
GAAGGCAACTACTCCGGCTGGCTGGAATCCAAGGCCGCCCGCCTGGCCCAGGAAGCCAAGCAGGAAGCCTCC 
CACGCCAAGGCCATGAAGGCCGAGCTGGAGTGGGTACGCCAGGGCGCCAAGGGCCGCCAGGCCAAGTCCAAG 
GCGCGCCTGCAGCGCTTCGAGGAACTGCAGTCGCAGGAATTCCAGAAGCGCAGCGAGACCAACGAGATCTAC 
ATCCCGGCCGGTCCGCGCCTGGGCGACAAGGTCATCGAACTGCACAACGTGACCAAGGGCTACGGCGACCGC 
GTGCTGATCGACAACCTGTCCCTGAGCATTCCCAAGGGCGCTATCGTCGGTGTGATCGGCGGCAACGGCGCG 
GGCAAGTCGACCCTGTTCCGCATGCTCACCGGCAAGGAGCAGCCGGACTCCGGCACCATCGAGATCGGCGAG 
ACCGTGCAGATCGCCAGCGTCGACCAGAGCCGTGACAGCCTGGAAGGCAACAAGACCGTGTGGGAGCAGGTT 
TCCGACGGTTTCGAGCAGATCAAGATCGGCAACTACGAAGTCCCGTCGCGCAGCTATGTCGGTCGCTTCAAC 
TTCAAGGGCGCCGACCAGCAGAAGTTCGTCAAGGACCTCTCCGGCGGTGAGCGTGGCCGTCTGCACCTGGCC 
CTGACCCTGAAGCAGGGTGGCAACGTGTTGCTGCTCGACGAACCGTCCAACGACCTCGACGTGGAAACCCTG 
CGTGCGCTGGAAGAGGCGCTGCTGGACTTCCCCGGCTCCGCCATCGTGATCTCCCACGACCGCTGGTTCCTC 
GACCGGATCGCCACCCACATCCTCTCCTACGAGGACGATGGCAAGGTGACCTTCTTCGAAGGCAACTACACC 
GAGTTCGAGGCCGACCGCAAGAAGCGCCTGGGCGACGCCGCGGCCCAGCCGCACCGCGTGCGCTACAAGAAA 
CTGGCGTAA