ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6039

TrivialName: PA14_32030

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_32030

PAO1 Ortholog Locus:

Sequence Length: 1125

Protein Length: 374

Start: 2789967

Stop: 2788845

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: TRUE

Missense Discrepancy: TRUE

Comments:
Homology: gb|AAF86203.1|AF238888_1 (AF238888) putative VrrB [Bacillus cereus] Identities = 49/166 (29%), Positives = 63/166 (37%), Gaps = 33/166 (19%)

Sequence:

GTGGGTCCAGCGATAGAGCACCGGCAGCACCAGCAGGGTCAGCATGGTCGAGGACAGGATGCCGCCGATCAC
CACCGTCGCCAGCGGCCGCTGCACCTCGGCGCCGGTGCCGGTGGCCAGGGCCATCGGCACGAAACCGAGGGA
GGCCACCAGGGCGGTCATCAGCACCGGACGCAGGCGGGTGATGGCGCCCTCCCACACCGCCTGGTCGAGGCT
GCGTCCTTCCTGCAACAGGTTGCGGATGAAGGAGATCATCACCAGGCCGTTGAGCACCGCCACCCCGGACAG
GGCGATGAAACCCACCGCCGCCGAGATCGACAGCGGTATCCCGCGCAGCCACAGGGCCAGCACCCCGCCGGT
GAGGGCGAAGGGGATGCCGGTGAACACCAGCAGGCCGTCCTTGACGTTGTTGAACATGGCGAAGAGCAAGGT
GAACACCAGCAGCAGCGCCACCGGCACCACTACCTGCAAGCGCTTGGCGGCGGACTGCAACTGTTCGAACTG
GCCGCCCCAGGTGGTCCAGTAGCCGGCCGGGATCTTCACCCCGTCCTGCAGCTTCTGTTGCGCTTCCAGCAC
GAACGAGCCGATGTCGCGGCCGCGCACGTTGGCGCTGACCACGATGCGCCGCTTGCCGTTCTCCCGGCTGAT
CTGGTTCGGTCCCGGCGAGAGGTCGaggCGCGCCACGTCCGACAGCGGGATGAAGTCGATCCGCGCCAGGTT
GTTCGGCGGCAGCGGGATCAGCAGGTTGGACAGTGCCGGCAGGTCGGCGCGCAGGGTTTCCGGCAGGCGGAT
GACGATGTCGAAGCGGCGGTCGCCCTCGAACAGGGTACCGGCGTTGCGTCCGCCGAGGGCGGTGGCCACGGT
GTCCTggATGTCGCCGACATTGAGGCCGAAGCGTGCCGCCTTGTCGCGGTCGATGTCCACCGTCAGCACCGG
CAGgCCGgTGggtCTGCTCGACCTTCACctcgggaGgCGCCGTCGATGCCTTGCAGCACCTTGgAGATCTTC
TCCGCAGTGTCGttGAGCACCTGCATGtCGTCGccgaAGAcCTTCACCGCGACGTCGCTGCGCACCCCgGAG
ATCAGTtcgTTGAagcgcAACTGGATCGGCTGGGAGAACTCGTAG

Translation:

MGPAIEHRQHQQGQHGRGQDAADHHRRQRPLHLGAGAGGQGHRHETEGGHQGGHQHRTQAGDGALPHRLVEA
ASFLQQVADEGDHHQAVEHRHPGQGDETHRRRDRQRYPAQPQGQHPAGEGEGDAGEHQQAVLDVVEHGEEQG
EHQQQRHRHHYLQALGGGLQLFELAAPGGPVAGRDLHPVLQLLLRFQHERADVAAAHVGADHDAPLAVLPAD
LVRSRREVEARHVRQRDEVDPRQVVRRQRDQQVGQCRQVGAQGFRQADDDVEAAVALEQGTGVASAEGGGHG
VLDVADIEAEACRLVAVDVHRQHRQAGGSARPSPREAPSMPCSTLEIFSAVSLSTCMSSPKTFTATSLRTPE
ISSLKRNWIGWENS*

AnnotationID:6040 GeneID:6039

AnnotatorUID: diggins

Modification Date/Time: 2004-07-06 18:06:08

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:15887

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29199

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33057

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6039_cdd.html

URL:

GC ORFID: `49041`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2163957`	Stop: `2165081`
Length: `1125`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGGTCCAGCGATAGAGCACCGGCAGCACCAGCAGGGTCAGCATGGTCGAGGACAGGATGCCGCCGATCAC CACCGTCGCCAGCGGCCGCTGCACCTCGGCGCCGGTGCCGGTGGCCAGGGCCATCGGCACGAAACCGAGGGA GGCCACCAGGGCGGTCATCAGCACCGGACGCAGGCGGGTGATGGCGCCCTCCCACACCGCCTGGTCGAGGCT GCGTCCTTCCTGCAACAGGTTGCGGATGAAGGAGATCATCACCAGGCCGTTGAGCACCGCCACCCCGGACAG GGCGATGAAACCCACCGCCGCCGAGATCGACAGCGGTATCCCGCGCAGCCACAGGGCCAGCACCCCGCCGGT GAGGGCGAAGGGGATGCCGGTGAACACCAGCAGGCCGTCCTTGACGTTGTTGAACATGGCGAAGAGCAAGGT GAACACCAGCAGCAGCGCCACCGGCACCACTACCTGCAAGCGCTTGGCGGCGGACTGCAACTGTTCGAACTG GCCGCCCCAGGTGGTCCAGTAGCCGGCCGGGATCTTCACCCCGTCCTGCAGCTTCTGTTGCGCTTCCAGCAC GAACGAGCCGATGTCGCGGCCGCGCACGTTGGCGCTGACCACGATGCGCCGCTTGCCGTTCTCCCGGCTGAT CTGGTTCGGTCCCGGCGAGAGGTCGaggCGCGCCACGTCCGACAGCGGGATGAAGTCGATCCGCGCCAGGTT GTTCGGCGGCAGCGGGATCAGCAGGTTGGACAGTGCCGGCAGGTCGGCGCGCAGGGTTTCCGGCAGGCGGAT GACGATGTCGAAGCGGCGGTCGCCCTCGAACAGGGTACCGGCGTTGCGTCCGCCGAGGGCGGTGGCCACGGT GTCCTggATGTCGCCGACATTGAGGCCGAAGCGTGCCGCCTTGTCGCGGTCGATGTCCACCGTCAGCACCGG CAGgCCGgTGggtCTGCTCGACCTTCACctcgggaGgCGCCGTCGATGCCTTGCAGCACCTTGgAGATCTTC TCCGCAGTGTCGttGAGCACCTGCATGtCGTCGccgaAGAcCTTCACCGCGACGTCGCTGCGCACCCCgGAG ATCAGTtcgTTGAagcgcAACTGGATCGGCTGGGAGAACTCGTAG