ViewGene
Locus Name:
GeneID:
Location:

GeneID:6038
TrivialName: PA14_32040
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32040
PAO1 Ortholog Locus:
Sequence Length:906
Protein Length:301
Start: 2789107
Stop: 2790012
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
GeneID6040 (PA14_32020) and GeneID6038 (PA14_32040) replaced by GID7416 (PA14_32025). C-terminus of PA2520, czcA. Homology: gb|AAG05908.1|AE004679_2 (AE004679) RND divalent metal cation efflux transporter CzcA [Pseudomonas aeruginosa PAO1]
Identities = 300/301 (99%), Positives = 301/301 (100%)
Sequence:
GTGGCCACCGCCCTCGGCGGACGCAACGCCGGTACCCTGTTCGAGGGCGACCGCCGCTTCGACATCGTCATC
CGCCTGCCGGAAACCCTGCGCGCCGACCTGCCGGCACTGTCCAACCTGCTGATCCCGCTGCCGCCGAACAAC
CTGGCGCGGATCGACTTCATCCCGCTGTCGGACGTGGCGCGcctCGACCTCTCGCCGGGACCGAACCAGATC
AGCCGGGAGAACGGCAAGCGGCGCATCGTGGTCAGCGCCAACGTGCGCGGCCGCGACATCGGCTCGTTCGTG
CTGGAAGCGCAACAGAAGCTGCAGGACGGGGTGAAGATCCCGGCCGGCTACTGGACCACCTGGGGCGGCCAG
TTCGAACAGTTGCAGTCCGCCGCCAAGCGCTTGCAGGTAGTGGTGCCGGTGGCGCTGCTGCTGGTGTTCACC
TTGCTCTTCGCCATGTTCAACAACGTCAAGGACGGCCTGCTGGTGTTCACCGGCATCCCCTTCGCCCTCACC
GGCGGGGTGCTGGCCCTGTGGCTGCGCGGGATACCGCTGTCGATCTCGGCGGCGGTGGGTTTCATCGCCCTG
TCCGGGGTGGCGGTGCTCAACGGCCTGGTGATGATCTCCTTCATCCGCAACCTGTTGCAGGAAGGACGCAGC
CTCGACCAGGCGGTGTGGGAGGGCGCCATCACCCGCCTGCGTCCGGTGCTGATGACCGCCCTGGTGGCCTCC
CTCGGTTTCGTGCCGATGGCCCTGGCCACCGGCACCGGCGCCGAGGTGCAGCGGCCGCTGGCGACGGTGGTG
ATCGGCGGCATCCTGTCCTCGACCATGCTGACCCTGCTGGTGCTGCCGGTGCTCTATCGCTGGACCCACGGG
CGTGACGCCGGTCCGCGCGAGGAGACGCCGGCGGCCGGCTGA
Translation:
MATALGGRNAGTLFEGDRRFDIVIRLPETLRADLPALSNLLIPLPPNNLARIDFIPLSDVARLDLSPGPNQI
SRENGKRRIVVSANVRGRDIGSFVLEAQQKLQDGVKIPAGYWTTWGGQFEQLQSAAKRLQVVVPVALLLVFT
LLFAMFNNVKDGLLVFTGIPFALTGGVLALWLRGIPLSISAAVGFIALSGVAVLNGLVMISFIRNLLQEGRS
LDQAVWEGAITRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGILSSTMLTLLVLPVLYRWTHG
RDAGPREETPAAG*
AnnotationID:6039GeneID:6038
AnnotatorUID: danlee
Modification Date/Time: 2006-03-10 18:06:31
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAK52285.1| (AY026914) membrane-bound cation-proton-antiporter CzrA [Pseudomonas
            putida]
          Length = 1051

 Score =  577 bits (1488), Expect = e-164
 Identities = 298/301 (99%), Positives = 300/301 (99%)

>gb|AAN65677.1|AE016194_7 (AE016774) cobalt/zinc/cadmium efflux RND transporter, permease
            protein, CzcA family [Pseudomonas putida KT2440]
          Length = 1053

 Score =  445 bits (1145), Expect = e-124
 Identities = 230/293 (78%), Positives = 255/293 (87%), Gaps = 3/293 (1%)

>emb|CAA67084.1| (X98451) membrane-bound cation-proton-antiporter [Ralstonia
            metallidurans]
          Length = 1063

 Score =  441 bits (1133), Expect = e-123
 Identities = 226/290 (77%), Positives = 253/290 (87%)







 
Structural Features:






   
Genomic Context:






   
Comment:
GeneID6040 (PA14_32020) and GeneID6038 (PA14_32040) replaced by GID7416 (PA14_32025). 
C-terminus of PA2520, czcA.


















    ReferenceID:15885




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29197




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33077




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6038_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6038
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7944
                           PA2520_tr
                           translation of PA2520
                           1051
                           28.63
                           28.63
                           750
                           1503.0
     

     
     
198043
                           gb|AAG05908.1|AE004679_2
                           (AE004679) RND divalent metal cation efflux transporter CzcA [Pseudomonas aeruginosa PAO1]
                           1051
                           28.63
                           28.63
                           750
                           1503.0
     

     
     
198044
                           emb|CAB56471.1|
                           (Y14018) czrA protein [Pseudomonas aeruginosa]
                           1051
                           28.63
                           28.63
                           750
                           1503.0
     

     
     
198045
                           gb|AAK52285.1|
                           (AY026914) membrane-bound cation-proton-antiporter CzrA [Pseudomonas putida]
                           1051
                           28.44
                           28.54
                           750
                           1491.0
     

     
     
198047
                           gb|AAN65677.1|AE016194_7
                           (AE016774) cobalt/zinc/cadmium efflux RND transporter, permease protein, CzcA family [Pseudomonas putida KT2440]
                           1055
                           21.99
                           24.45
                           756
                           1147.0
     

     






      

          
GC ORFID: 49040How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2164817Stop: 2163912

          
Length: 906


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2520 translation of PA2520Homolog Bit Score 583.0

          
Other Homologs:  t_PA2520 translation of PA2520 (BLASTP 583), psyr_15may02_Scaffold6_revised_gene6877 related to: gi|12484566|gb|AAG09629.1| (AY007258) CztA [Pseudomonas fluorescens] (BLASTP 432)

          
GC ORF Sequence

           
GTGGCCACCGCCCTCGGCGGACGCAACGCCGGTACCCTGTTCGAGGGCGACCGCCGCTTCGACATCGTCATC 
CGCCTGCCGGAAACCCTGCGCGCCGACCTGCCGGCACTGTCCAACCTGCTGATCCCGCTGCCGCCGAACAAC 
CTGGCGCGGATCGACTTCATCCCGCTGTCGGACGTGGCGCGcctCGACCTCTCGCCGGGACCGAACCAGATC 
AGCCGGGAGAACGGCAAGCGGCGCATCGTGGTCAGCGCCAACGTGCGCGGCCGCGACATCGGCTCGTTCGTG 
CTGGAAGCGCAACAGAAGCTGCAGGACGGGGTGAAGATCCCGGCCGGCTACTGGACCACCTGGGGCGGCCAG 
TTCGAACAGTTGCAGTCCGCCGCCAAGCGCTTGCAGGTAGTGGTGCCGGTGGCGCTGCTGCTGGTGTTCACC 
TTGCTCTTCGCCATGTTCAACAACGTCAAGGACGGCCTGCTGGTGTTCACCGGCATCCCCTTCGCCCTCACC 
GGCGGGGTGCTGGCCCTGTGGCTGCGCGGGATACCGCTGTCGATCTCGGCGGCGGTGGGTTTCATCGCCCTG 
TCCGGGGTGGCGGTGCTCAACGGCCTGGTGATGATCTCCTTCATCCGCAACCTGTTGCAGGAAGGACGCAGC 
CTCGACCAGGCGGTGTGGGAGGGCGCCATCACCCGCCTGCGTCCGGTGCTGATGACCGCCCTGGTGGCCTCC 
CTCGGTTTCGTGCCGATGGCCCTGGCCACCGGCACCGGCGCCGAGGTGCAGCGGCCGCTGGCGACGGTGGTG 
ATCGGCGGCATCCTGTCCTCGACCATGCTGACCCTGCTGGTGCTGCCGGTGCTCTATCGCTGGACCCACGGG 
CGTGACGCCGGTCCGCGCGAGGAGACGCCGGCGGCCGGCTGA