ViewGene

Locus Name:
GeneID:
Location:

GeneID:6025
TrivialName: PA14_32560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32560
PAO1 Ortholog Locus:
Sequence Length:1686
Protein Length:561
Start: 2829096
Stop: 2827411
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens]
Identities = 163/579 (28%), Positives = 194/579 (33%), Gaps = 109/579 (18%)
Sequence:
ATGGCTTCGGCGACGAGGTCGAGAGCAACGCCCTCAACGTCCACATCCATCACCTGCGGCGCAAGCTCGGCA
ACGCCATCGTGCAGACCGTGCGCGGCCTCGGCTACCGCCTCGGGCCGGCGCGCGGCGACGGAGACGACGCAT
GAGCCTGCGCCTGCGCCTGACCCTGATCCTCGGCTCGGCCTTCATCCTGCTCTGGTCGCTGGCCGCGGCCTG
GATGCTCTGCGACCTGCGCGGGCAGATGATGCGCTCCTTCGACCAACGCCTGGCGGCCTCGGCGCGGATGGT
CGCCGGCCTGCTCCAGCAGTTGCCGCAGCCGCAGCCGGCGGACGGCCAGACCACGCGCCTGAGCGCGGAGCA
ACTGGGGATTCCCAACGGCATGGCCTGCCAGGTCAGCTCATTGCGCGGCGAAGTCCTGGCGCAGAGCCATGC
CACCCCGGAGCGGGCGCTGGACAGCACCGCCAGCGGCTTCCGCGACCAGGAAATCAACGGCGTGCTGTGGCG
CAGCTTCACCGTGCAGGCCGGCGACCTGCGGGTCAGCACCGCCGACCGCCTGGAAGAGCGCGACGTGCTGCA
ACGCTCGGTGGTGGTGGCCGCCGCGGTGCCGGTGACGGTCGCCCTGCTCGGCAGCCTGGCCCTGCTCTGGCT
CGGCGCCGGCCAGGGTCTGGCGCCGCTCAAGCGGATTCGCGACGCCCTCACCCGGCGCGGCGCCGACTCGCT
GGAGCCACTGGAGCTGGCGGCCCTGCCGAGCGAACTGAAGCCGCTGGTGGAAACCCAGAACCAGTTGTTCCA
GCGCATCGCCCAGGCCATCGAACGCGAGCGACGCCTGACCGGCGATGCCGCCCACGAACTGCGCAGCCCGCT
GACCGCGATCAAGACCCACCTGCAGGTCGCGCGCATGACCGAGGGCGCCGCCGCCGAGCAGGCCCTGGCCCA
CGCCGAGGAAGGCGCCGACCGTCTGCATCGGACACTGGACCAGCTGTTGCTGCTGGCGCGGGTGGAAGGCAG
CCTGTCGTTCGACGACGGCGTGCAGTGCAGCGCCGAGGACGCCGCCCGGGTGGCCATGCACGACGCCGGCCA
CGGCGACGTGCGGATGTTCGAACTGAAGCTGGCCGACGGCTTGTCCGAGGCGCCGCTGGAAGTCCCCTCGGT
GCTGGCCATCGCCGCGCTGCGCAACCTGCTGGACAACGCCCTGCGCCACACCGCCGCCGGCACCCGGGTGGA
GCTGGCGGTGGAAACCGCGCAAGGCTGCGCGCGCTTCCACGTCCGCGACCACGGTCCGGGCATCGCCGAAAC
CGACCTGCCGCACCTCACCCGGCGCTTCTGGCGCCACGGCAAGAGCGGCGGCAGCGGGCTCGGTCTGGCCAT
CGTCCAGGCCATCGTGCAACGCTGCCAATGCCGGCTGGACTTCGACAGCCGCGCGGACGGCCTGCGGGTGAC
GCTGGAAATGCCGCTGCGCGAGTGATGCGCGGGCACCACGCGCGCGCCCACCCGCCAACCGACTCCCGTAGG
GCGAATAGCCGCCCCGCGGCTATCCGCCGGACCGAGGCCCAGGCATCGGCGGATAACGCCGTTGGCGTTATC
CGCCCTACCCCCGCGCCGACCTGCTTCCGCCGGACCGGGTCTCCGTCCTGCGGACGCCAGGCCACGAGGGTC
AGATTCCCTGTCCCAGCAGCACGCCGTTGA
Translation:
MASATRSRATPSTSTSITCGASSATPSCRPCAASATASGRRAATETTHEPAPAPDPDPRLGLHPALVAGRGL
DALRPARADDALLRPTPGGLGADGRRPAPAVAAAAAGGRPDHAPERGATGDSQRHGLPGQLIARRSPGAEPC
HPGAGAGQHRQRLPRPGNQRRAVAQLHRAGRRPAGQHRRPPGRARRAATLGGGGRRGAGDGRPARQPGPALA
RRRPGSGAAQADSRRPHPARRRLAGATGAGGPAERTEAAGGNPEPVVPAHRPGHRTRATPDRRCRPRTAQPA
DRDQDPPAGRAHDRGRRRRAGPGPRRGRRRPSASDTGPAVAAGAGGRQPVVRRRRAVQRRGRRPGGHARRRP
RRRADVRTEAGRRLVRGAAGSPLGAGHRRAAQPAGQRPAPHRRRHPGGAGGGNRARLRALPRPRPRSGHRRN
RPAAPHPALLAPRQERRQRARSGHRPGHRATLPMPAGLRQPRGRPAGDAGNAAARVMRGHHARAHPPTDSRR
ANSRPAAIRRTEAQASADNAVGVIRPTPAPTCFRRTGSPSCGRQATRVRFPVPAARR*
AnnotationID:6026GeneID:6025
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 18:06:49
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:11944
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29171
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49027How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2124828Stop: 2126513
Length: 1686
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGCTTCGGCGACGAGGTCGAGAGCAACGCCCTCAACGTCCACATCCATCACCTGCGGCGCAAGCTCGGCA
ACGCCATCGTGCAGACCGTGCGCGGCCTCGGCTACCGCCTCGGGCCGGCGCGCGGCGACGGAGACGACGCAT
GAGCCTGCGCCTGCGCCTGACCCTGATCCTCGGCTCGGCCTTCATCCTGCTCTGGTCGCTGGCCGCGGCCTG
GATGCTCTGCGACCTGCGCGGGCAGATGATGCGCTCCTTCGACCAACGCCTGGCGGCCTCGGCGCGGATGGT
CGCCGGCCTGCTCCAGCAGTTGCCGCAGCCGCAGCCGGCGGACGGCCAGACCACGCGCCTGAGCGCGGAGCA
ACTGGGGATTCCCAACGGCATGGCCTGCCAGGTCAGCTCATTGCGCGGCGAAGTCCTGGCGCAGAGCCATGC
CACCCCGGAGCGGGCGCTGGACAGCACCGCCAGCGGCTTCCGCGACCAGGAAATCAACGGCGTGCTGTGGCG
CAGCTTCACCGTGCAGGCCGGCGACCTGCGGGTCAGCACCGCCGACCGCCTGGAAGAGCGCGACGTGCTGCA
ACGCTCGGTGGTGGTGGCCGCCGCGGTGCCGGTGACGGTCGCCCTGCTCGGCAGCCTGGCCCTGCTCTGGCT
CGGCGCCGGCCAGGGTCTGGCGCCGCTCAAGCGGATTCGCGACGCCCTCACCCGGCGCGGCGCCGACTCGCT
GGAGCCACTGGAGCTGGCGGCCCTGCCGAGCGAACTGAAGCCGCTGGTGGAAACCCAGAACCAGTTGTTCCA
GCGCATCGCCCAGGCCATCGAACGCGAGCGACGCCTGACCGGCGATGCCGCCCACGAACTGCGCAGCCCGCT
GACCGCGATCAAGACCCACCTGCAGGTCGCGCGCATGACCGAGGGCGCCGCCGCCGAGCAGGCCCTGGCCCA
CGCCGAGGAAGGCGCCGACCGTCTGCATCGGACACTGGACCAGCTGTTGCTGCTGGCGCGGGTGGAAGGCAG
CCTGTCGTTCGACGACGGCGTGCAGTGCAGCGCCGAGGACGCCGCCCGGGTGGCCATGCACGACGCCGGCCA
CGGCGACGTGCGGATGTTCGAACTGAAGCTGGCCGACGGCTTGTCCGAGGCGCCGCTGGAAGTCCCCTCGGT
GCTGGCCATCGCCGCGCTGCGCAACCTGCTGGACAACGCCCTGCGCCACACCGCCGCCGGCACCCGGGTGGA
GCTGGCGGTGGAAACCGCGCAAGGCTGCGCGCGCTTCCACGTCCGCGACCACGGTCCGGGCATCGCCGAAAC
CGACCTGCCGCACCTCACCCGGCGCTTCTGGCGCCACGGCAAGAGCGGCGGCAGCGGGCTCGGTCTGGCCAT
CGTCCAGGCCATCGTGCAACGCTGCCAATGCCGGCTGGACTTCGACAGCCGCGCGGACGGCCTGCGGGTGAC
GCTGGAAATGCCGCTGCGCGAGTGATGCGCGGGCACCACGCGCGCGCCCACCCGCCAACCGACTCCCGTAGG
GCGAATAGCCGCCCCGCGGCTATCCGCCGGACCGAGGCCCAGGCATCGGCGGATAACGCCGTTGGCGTTATC
CGCCCTACCCCCGCGCCGACCTGCTTCCGCCGGACCGGGTCTCCGTCCTGCGGACGCCAGGCCACGAGGGTC
AGATTCCCTGTCCCAGCAGCACGCCGTTGA