ViewGene
Locus Name:
GeneID:
Location:

GeneID:5987
TrivialName: PA14_34060
AnnotatorUID: diggins
Modification Date/Time:2006-04-23 11:11:39
LocusName:PA14_34060
PAO1 Ortholog Locus:
Sequence Length:666
Protein Length:221
Start: 3029053
Stop: 3029718
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
ATGCGGCCCTTGGCGATGATCTCGTCGAGCAGGGACAGGGTCTGGGTCGAACTCTCGCCGGATTGTTCGGCG
GCGGATGACTTGGGCATGGCGGCTTCTCCGGGAAGAGGGTCAGGCCGGCTGGTCGGCCGGGGGTTCGCTGTC
GCCGGCCGGGGCCGCTTCGGCTTCCGGGCGGGCCGCTTTGATTTCCTGCAGGCCTTCGGTGTTGGCCACCAC
GTCCTGCAGCAACTGGTCGAGGTCGTCGTTGCCGTCGAGCTTGGTCAGCAGGTCGCGCAGGCGCTGGCGCGC
TTCGAACAGGCGACGCAACGGGACCACCTGCTTCACCAGGTTGACCGGGTCGAAGTCCTCGATGTGGTTGAA
GCGCAGCTCGACGTTCAGCTTGCTGTCGTCGCCGCTGATGGTGTTGTCGACCTGCAGGGTGGCGCGGGGAGA
GATGGAGGAGAGGATCTCGTTGAAGTTGTCGCGGTCGATGTCGACGAAACGCCGTTCGACCAGCTTCGCCGG
CGGGGTATCCGGCTTGCCGGAGAGGTCGGCGAGGATGCCGACCACCAGGGGCAGCTCCTTCTTCTCGATGGC
GTTGCCGATCTCGACGTCGTAGGTGATCTGCACGCGCGGCGGGCGCACCCGGTCCAGCTTGTGCTGCGTACT
CTCGGCCATGGCGGCTGA
Translation:
MRPLAMISSSRDRVWVELSPDCSAADDLGMAASPGRGSGRLVGRGFAVAGRGRFGFRAGRFDFLQAFGVGHH
VLQQLVEVVVAVELGQQVAQALARFEQATQRDHLLHQVDRVEVLDVVEAQLDVQLAVVAADGVVDLQGGAGR
DGGEDLVEVVAVDVDETPFDQLRRRGIRLAGEVGEDADHQGQLLLLDGVADLDVVGDLHARRAHPVQLVLRT
LGHGG*
AnnotationID:5988GeneID:5987
AnnotatorUID: diggins
Modification Date/Time: 2006-04-23 11:11:54
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:11874




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29095




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48989How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1924863Stop: 1924198

          
Length: 666


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCGGCCCTTGGCGATGATCTCGTCGAGCAGGGACAGGGTCTGGGTCGAACTCTCGCCGGATTGTTCGGCG 
GCGGATGACTTGGGCATGGCGGCTTCTCCGGGAAGAGGGTCAGGCCGGCTGGTCGGCCGGGGGTTCGCTGTC 
GCCGGCCGGGGCCGCTTCGGCTTCCGGGCGGGCCGCTTTGATTTCCTGCAGGCCTTCGGTGTTGGCCACCAC 
GTCCTGCAGCAACTGGTCGAGGTCGTCGTTGCCGTCGAGCTTGGTCAGCAGGTCGCGCAGGCGCTGGCGCGC 
TTCGAACAGGCGACGCAACGGGACCACCTGCTTCACCAGGTTGACCGGGTCGAAGTCCTCGATGTGGTTGAA 
GCGCAGCTCGACGTTCAGCTTGCTGTCGTCGCCGCTGATGGTGTTGTCGACCTGCAGGGTGGCGCGGGGAGA 
GATGGAGGAGAGGATCTCGTTGAAGTTGTCGCGGTCGATGTCGACGAAACGCCGTTCGACCAGCTTCGCCGG 
CGGGGTATCCGGCTTGCCGGAGAGGTCGGCGAGGATGCCGACCACCAGGGGCAGCTCCTTCTTCTCGATGGC 
GTTGCCGATCTCGACGTCGTAGGTGATCTGCACGCGCGGCGGGCGCACCCGGTCCAGCTTGTGCTGCGTACT 
CTCGGCCATGGCGGCTGA