ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5986

TrivialName: PA14_34090

AnnotatorUID: diggins

Modification Date/Time: 2006-04-23 15:03:59

LocusName: PA14_34090

PAO1 Ortholog Locus:

Sequence Length: 1413

Protein Length: 470

Start: 3031802

Stop: 3030390

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAM41583.1| (AE012338) virulence protein [Xanthomonas campestris pv. campestris str. ATCC 33913] Identities = 45/146 (30%), Positives = 61/146 (41%), Gaps = 20/146 (13%)

Sequence:

TTGGCGGCTCCTTCCTGTCTAGGTGTTGTCGCTGCCGTCGGCGACGAACAGCACGATCTGCCAGGGACTGCT
GGCGACCCCGCTGACCGGCGCGACGATGCGCAGCGGCTGGCCGGCATCGAACCAGTCGCCGACGCCCTGCAC
GACGAACAAACGGGTGTCGTCGCCGACGCTGTAGGCCACCTGTTCCTGGCGATTCATCGGCTGCCGCGCCAG
CCCGCTCATGCGTTGCCGGGCGAGCAACGGCAGGTGCGGGTCGGAGGCGACGATGGCGCGCTCCAGCCAGTC
AGCCGCCGCTTGTTCGCCGGCGCCGGCGGGCATCCGCAGGCCGACCACCAGGCGCTGACGCGGCGCCGGATC
GGGCAGGCGCACGGAAAATACCTGTTCCTCCTGCTCGAACGGCAGGCAGCGGTAGCCCGCGCGGATCGACTC
GATGGCGCGCTCCAGCCAGTCCAGCAGCGGCTCGTAGCCACGCCGCAGGTCGAGGAAGTCGAGCGCTTCGAA
GGCCGGCACGCCGGCCAGCGGATCGAGCGCCGCCCAGGCCCCGGCCAGGCCCAGCAGGCTGCCGTGCAGGGC
CAGCGGCGAGGCCGCGCGGCTTGCCAGCAGGCCTTCCACCTCCGGCAGGCGGGTCCAGAGCGCGGCGAGCTG
GCGACGGACTTCCACCGCGTCGTCCTGGTTGCCCGCCTGCTGCGCCAGGCGCAGGCGCCCGCCGAGGAACAG
CGCCTTCTCCCGGGCCCGCGCGCAGAGCGACTGCACGCGCCTGCCCAGGGGCGACTCCGGCAGCACCAATGG
CGTCGGCGGGACGTAGGGCAGGCTGACATAGGCGCCGCCCTCCTTCGCCACGCGCAGCAACGGCAGGCACAC
GGAGTCGGCCTTGCCGTCGTCGCCGACCAGCCGCAGCGACGCTCGCCAGACGGTGATCGGCTCGGGGTGCTC
GCCGCTGGCCAGGTCCGGCAGCGGCGCGCCGACCCGCGATTGCAGACGGCCCTTCAGCGGCAGCAACTGACC
CGCCCGCCACAGCGGACTGACCGCCAGGTGGACGTTCAGCAGCGGCCCTTCGGCGGCCGCCAGCGCAGTCTC
CAGGTCGAACTCCAGCGGTGCGTCGACACCAGCCTGCACGCTCACCGGCAGGCCGTCGGGCAGGATCGCTTC
GAGGTGCAGGATCCGCACTTGGCCGGCGCACAACGCCGAGGGGTCCAGTTCCAGGGCGGTCACGCCCCAGAA
CCAAGGGTTGCAGGCCTGTCCGGTGCGCGCCGCCAGCGCCTCGGCACGCAATCCCTGCAACTGGAAATGCTG
GGGAAGCAGTTGCATCCCTTCGTGCCAGCACACCGCGTCAGGCAGAACACTCATACGACTCCCCTTCGACGT
CCTACGTTGTCGTGCACGACGGTCGCTCGCCTGCCCCTTCGCTAG

Translation:

MAAPSCLGVVAAVGDEQHDLPGTAGDPADRRDDAQRLAGIEPVADALHDEQTGVVADAVGHLFLAIHRLPRQ
PAHALPGEQRQVRVGGDDGALQPVSRRLFAGAGGHPQADHQALTRRRIGQAHGKYLFLLLERQAAVARADRL
DGALQPVQQRLVATPQVEEVERFEGRHAGQRIERRPGPGQAQQAAVQGQRRGRAACQQAFHLRQAGPERGEL
ATDFHRVVLVARLLRQAQAPAEEQRLLPGPRAERLHAPAQGRLRQHQWRRRDVGQADIGAALLRHAQQRQAH
GVGLAVVADQPQRRSPDGDRLGVLAAGQVRQRRADPRLQTALQRQQLTRPPQRTDRQVDVQQRPFGGRQRSL
QVELQRCVDTSLHAHRQAVGQDRFEVQDPHLAGAQRRGVQFQGGHAPEPRVAGLSGARRQRLGTQSLQLEML
GKQLHPFVPAHRVRQNTHTTPLRRPTLSCTTVARLPLR*

AnnotationID:5987 GeneID:5986

AnnotatorUID: diggins

Modification Date/Time: 2006-04-23 15:03:14

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: INACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:15838

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29093