ViewGene

Locus Name:
GeneID:
Location:

GeneID:5984
TrivialName: PA14_34160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34160
PAO1 Ortholog Locus:
Sequence Length:2217
Protein Length:738
Start: 3040891
Stop: 3038675
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK22724.1| (AE005749) hypothetical protein [Caulobacter crescentus CB15]
Identities = 95/369 (25%), Positives = 133/369 (36%), Gaps = 53/369 (14%)
Sequence:
GTGCGGATAGCCGGAGAAGATGAAGCTGTCGATGCCAAGCTCGGCGTACTCCCCGATGCGCTCCGCCACCTG
CCGCGGATCGCCGACCAGCGCGGTGCCGGCGCCGCCGCGCACCAGGCCGACCCCGGCCCAGAGGTTCGGCTG
GATCTCCAGGCGATCGCGGCGGCCGCCGTGCAGCGCGGCCATGCGTCGCTGGCCTTCGGAGTCGAAACGGGC
GAAGGACTGCTGCGCGGCGGCGATGGTCTCGTCGGAGATGTGTTCGATCAGCCTGTCCGCGGCGCGCCAGGC
TTCTTCGGCGGTTTCGCGGACGATCACATGCAGGCGGATGCCGAACTTCACCGTACGCCCATGGCGAGCCGC
TCGCTGGCGCACGTCGGCGATCTTCGCCGCCACCGCCGGCAACGGCTCGCCCCAGGTCAGGTAGACGTCCAC
CTGTTCGCCGGCCAGTTCGTGGGCGGCCTCCGAGGAACCGCCGAAGTACAGCGGCGGATACGGCCGTTGCAG
CGGCGGATAGAGCGCCTTGGCGTTCTCCACGTGGATGTGCTTGCCGTGGAAGTCCACCGCCTCGCCCTGCAG
GACGCGCCGCCAGACCCGAAGGAACTCGTCGGTGACCTCGTAGCGCTCGGCGTGGCCGAGGTGGATGCCGTC
GCCGCGGTTCTCGTCGGGATCGCCGCCGGTGACCACGTTGATCAGCAGGCGCCCGCCGGACAGGCGGTCGAG
GGTCGCCGCCATCCGCGCCGAGACGGTCGGCGAAACGATTCCCGGACGGATCGCCACCAGGAAGCGCAGGCG
CTCGGTCAGCGGCGCCAGCGCCGAGGCCACCACCCAGGAGTCCTCGCAGGAGCGTCCGGTGGGGATCAGCAC
GCCGTGGTAGCCGAGGCTGTCGGCCGCCTGAGCCACCTGCTTCAGGTAAGGCAGCGAGACCGGCCGCGCGCC
CTGGCTGGTGCCGAGGAAGTGGCCATCGCCGTGGGTCGGGAGGAACCAGAACACGTTCATCGGCGCACCTCA
GGCGATCTTCAACAGTTCGGAGCGTCCGCCGAACAGCGGCGCGGCGCGCTCGGCGGCGAGGCGGATGCGCGC
CTTCAGCGGCTCGCTGACGATCCGGTAGTTGTCGAAGTCGGCCTCGCTGGCGTAGACCCCGATGGGCAGGGT
GATCGCCTGGAAGAAGCTGAACAGCGGGCGCAACTGGTGGTCGAGGACCAGCGCGTGGCGCTCGGTGCCGCC
AGTGGCGGCGAGCAGCACCGGGGTGTCGATCAAGGCGTTGAGGTCGATCAGGTCGAACAGGTGCTTGAGCAG
GCCCGGATAGGAGCCACGGTAGACCGGCGAGGCGACCAGCAGCAGGTCGGCGCTTTCGATCTCGTCGAGCAC
CGCCTGCAGTTCCGCCGGCGCCTGGTTGCGCGCCAGGGTAGCGCCCAGCGGCGCGGCGATGTCGGTCAGCTC
GATGACCCGGCTGTCGATCGGCAGCGACTGGCCAAGCTCGGCGATCAGGGCCTGGGTGAGTACCAGGGTGCG
GGACGGGCGATAGGTGCCGCCGGAGACGGCGACGACTTTGAAGGGGCTGGTCATGGGATTTCCCTGTGGACT
GTTGCGCTAGGTGCAGTGCCCTGGAGCAAGGGCCGTACCAACGGGGAAATGTGCGTTTTCCGGGCAGTTGCG
GCGGGTTTCCGGCCTCGGCCTGTCAGCCACGCAACAGCGCTGCTGTCCGACTGTTGCCCGGGCAACAGTTCA
GTTCAGCTTGTAGGCCTGGAGCAGGAATATCTGGAATGCCCGCGCCGAATGCTGGTCGCCCGGTGGCAGGAC
GAACGGCGGCAGGCGCCCCTTGCGGCGCTTGACGTCGGCCCAGCGCTGGCCATTGCGCGAATGGAACTGGCA
GAACGGCTGGTCGCCCAGGTAGAACACCCCCGGCCGCGGCTCGCGGATGCGCGGCCAGCGGCGCAGGCAATC
CAGCAGCGGGCCGAGGTCGGCGAGTTGTTCCGGCGAACAGTACGGCATGCAGCGATCCTCTTCGCCGGGTCG
GGAAACCAAGGTTGCTGTGACTGGAGGACCAGGCGGACTCGGCGCGGCCGGGAAAGCGGCTACCGGGAGCGA
GCGACACGGGCGAGCGGAGCGAGGCATGGCGACGTCCCTGGTCCAGCCAACGAGATTCATCGCTCCGTTGTA
GAACAGCCGCCGTCCGGGTTCTTGCCGGTTTTGTGGGGGAATTGTGAAAGACTGTAA
Translation:
MRIAGEDEAVDAKLGVLPDALRHLPRIADQRGAGAAAHQADPGPEVRLDLQAIAAAAVQRGHASLAFGVETG
EGLLRGGDGLVGDVFDQPVRGAPGFFGGFADDHMQADAELHRTPMASRSLAHVGDLRRHRRQRLAPGQVDVH
LFAGQFVGGLRGTAEVQRRIRPLQRRIERLGVLHVDVLAVEVHRLALQDAPPDPKELVGDLVALGVAEVDAV
AAVLVGIAAGDHVDQQAPAGQAVEGRRHPRRDGRRNDSRTDRHQEAQALGQRRQRRGHHPGVLAGASGGDQH
AVVAEAVGRLSHLLQVRQRDRPRALAGAEEVAIAVGREEPEHVHRRTSGDLQQFGASAEQRRGALGGEADAR
LQRLADDPVVVEVGLAGVDPDGQGDRLEEAEQRAQLVVEDQRVALGAASGGEQHRGVDQGVEVDQVEQVLEQ
ARIGATVDRRGDQQQVGAFDLVEHRLQFRRRLVARQGSAQRRGDVGQLDDPAVDRQRLAKLGDQGLGEYQGA
GRAIGAAGDGDDFEGAGHGISLWTVALGAVPWSKGRTNGEMCVFRAVAAGFRPRPVSHATALLSDCCPGNSS
VQLVGLEQEYLECPRRMLVARWQDERRQAPLAALDVGPALAIARMELAERLVAQVEHPRPRLADARPAAQAI
QQRAEVGELFRRTVRHAAILFAGSGNQGCCDWRTRRTRRGRESGYRERATRASGARHGDVPGPANEIHRSVV
EQPPSGFLPVLWGNCERL*
AnnotationID:5985GeneID:5984
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:14
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:15834
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29089
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48986How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1913025Stop: 1915241
Length: 2217
Start Codon: GTGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGCGGATAGCCGGAGAAGATGAAGCTGTCGATGCCAAGCTCGGCGTACTCCCCGATGCGCTCCGCCACCTG
CCGCGGATCGCCGACCAGCGCGGTGCCGGCGCCGCCGCGCACCAGGCCGACCCCGGCCCAGAGGTTCGGCTG
GATCTCCAGGCGATCGCGGCGGCCGCCGTGCAGCGCGGCCATGCGTCGCTGGCCTTCGGAGTCGAAACGGGC
GAAGGACTGCTGCGCGGCGGCGATGGTCTCGTCGGAGATGTGTTCGATCAGCCTGTCCGCGGCGCGCCAGGC
TTCTTCGGCGGTTTCGCGGACGATCACATGCAGGCGGATGCCGAACTTCACCGTACGCCCATGGCGAGCCGC
TCGCTGGCGCACGTCGGCGATCTTCGCCGCCACCGCCGGCAACGGCTCGCCCCAGGTCAGGTAGACGTCCAC
CTGTTCGCCGGCCAGTTCGTGGGCGGCCTCCGAGGAACCGCCGAAGTACAGCGGCGGATACGGCCGTTGCAG
CGGCGGATAGAGCGCCTTGGCGTTCTCCACGTGGATGTGCTTGCCGTGGAAGTCCACCGCCTCGCCCTGCAG
GACGCGCCGCCAGACCCGAAGGAACTCGTCGGTGACCTCGTAGCGCTCGGCGTGGCCGAGGTGGATGCCGTC
GCCGCGGTTCTCGTCGGGATCGCCGCCGGTGACCACGTTGATCAGCAGGCGCCCGCCGGACAGGCGGTCGAG
GGTCGCCGCCATCCGCGCCGAGACGGTCGGCGAAACGATTCCCGGACGGATCGCCACCAGGAAGCGCAGGCG
CTCGGTCAGCGGCGCCAGCGCCGAGGCCACCACCCAGGAGTCCTCGCAGGAGCGTCCGGTGGGGATCAGCAC
GCCGTGGTAGCCGAGGCTGTCGGCCGCCTGAGCCACCTGCTTCAGGTAAGGCAGCGAGACCGGCCGCGCGCC
CTGGCTGGTGCCGAGGAAGTGGCCATCGCCGTGGGTCGGGAGGAACCAGAACACGTTCATCGGCGCACCTCA
GGCGATCTTCAACAGTTCGGAGCGTCCGCCGAACAGCGGCGCGGCGCGCTCGGCGGCGAGGCGGATGCGCGC
CTTCAGCGGCTCGCTGACGATCCGGTAGTTGTCGAAGTCGGCCTCGCTGGCGTAGACCCCGATGGGCAGGGT
GATCGCCTGGAAGAAGCTGAACAGCGGGCGCAACTGGTGGTCGAGGACCAGCGCGTGGCGCTCGGTGCCGCC
AGTGGCGGCGAGCAGCACCGGGGTGTCGATCAAGGCGTTGAGGTCGATCAGGTCGAACAGGTGCTTGAGCAG
GCCCGGATAGGAGCCACGGTAGACCGGCGAGGCGACCAGCAGCAGGTCGGCGCTTTCGATCTCGTCGAGCAC
CGCCTGCAGTTCCGCCGGCGCCTGGTTGCGCGCCAGGGTAGCGCCCAGCGGCGCGGCGATGTCGGTCAGCTC
GATGACCCGGCTGTCGATCGGCAGCGACTGGCCAAGCTCGGCGATCAGGGCCTGGGTGAGTACCAGGGTGCG
GGACGGGCGATAGGTGCCGCCGGAGACGGCGACGACTTTGAAGGGGCTGGTCATGGGATTTCCCTGTGGACT
GTTGCGCTAGGTGCAGTGCCCTGGAGCAAGGGCCGTACCAACGGGGAAATGTGCGTTTTCCGGGCAGTTGCG
GCGGGTTTCCGGCCTCGGCCTGTCAGCCACGCAACAGCGCTGCTGTCCGACTGTTGCCCGGGCAACAGTTCA
GTTCAGCTTGTAGGCCTGGAGCAGGAATATCTGGAATGCCCGCGCCGAATGCTGGTCGCCCGGTGGCAGGAC
GAACGGCGGCAGGCGCCCCTTGCGGCGCTTGACGTCGGCCCAGCGCTGGCCATTGCGCGAATGGAACTGGCA
GAACGGCTGGTCGCCCAGGTAGAACACCCCCGGCCGCGGCTCGCGGATGCGCGGCCAGCGGCGCAGGCAATC
CAGCAGCGGGCCGAGGTCGGCGAGTTGTTCCGGCGAACAGTACGGCATGCAGCGATCCTCTTCGCCGGGTCG
GGAAACCAAGGTTGCTGTGACTGGAGGACCAGGCGGACTCGGCGCGGCCGGGAAAGCGGCTACCGGGAGCGA
GCGACACGGGCGAGCGGAGCGAGGCATGGCGACGTCCCTGGTCCAGCCAACGAGATTCATCGCTCCGTTGTA
GAACAGCCGCCGTCCGGGTTCTTGCCGGTTTTGTGGGGGAATTGTGAAAGACTGTAA