ViewGene

Locus Name:
GeneID:
Location:

GeneID:5982
TrivialName: PA14_34240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34240
PAO1 Ortholog Locus:
Sequence Length:1179
Protein Length:392
Start: 3045929
Stop: 3044751
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens]
Identities = 107/375 (28%), Positives = 133/375 (35%), Gaps = 58/375 (15%)
Sequence:
GTGAAAAAGAAAGAAGGAAAGGCGCCTCATGCGGCAAAGATTCTGGCAAGGAACATTCAAGACCCTGGGCCT
CCTCGGCCTGACGGCGGGGCTCGCCGCCCAGGCCGCGGAGCCGTCCGGCAAGGCCCTCAGCGCCGCCGCCGG
CGTGCCCTGGCCGGCGGTCATCGCCCACCGCGGCGCCTCGTACGACGCCCCCGAGGAAACCGCCGCGGCCTA
CCTACTGGCCCGCGACCTCGGCGCCGACTACCTGGAAGCCGACGTGCAGCGCAGCCGCGACGGCGTACTGGT
CGCCCTCCACGACGACACCCTGGAGCGCACCACCGACGTCGCCGAGGTCTTCCCGGGACGCGCCAAGGACCC
GGTGAGCAGCTTCACTCTCGCCGAACTCAAGCGCCTGGACGCCGGCTCCTGGTTCAATCGCGCCTTCCCCGA
GCGCGCCCGGCCCGGCTTCGTCGGCCTGCGCATCCTCACCCTCGACGAGATGCTCGACATCGCCGAGGGCGG
CGCCAACAAGCCGGGCCTGTACCTGGAGACCAAGGTACCGGCGCAATTCCCCGGCATCGAAGACGACCTGCG
CAAGCTGCTGGAACGCCGCGGCTGGCTGCAACCCCGCGAGCGCGCCGCCGCCGGGCATGTCGACGTGGCCCA
CGGCAATGGCCGGGTGATCCTGCAGACCTTCGAGAAGAGCAGCCTGGAACTGCTGCAAGAAAGCATGCCGCA
AGTGCCGAAGATTCTCCTGCTGTGGCTCGGCGACGGTTACCTGGAAGCCCGTTCGCCAGTGACCTTCAAGGA
ATCCGGGGAAACCGACAAGGCGGCCTTCTACGCCAGGCAGGAAGTGAAGTCCGAAGCCGAGTTCGGCGCCTG
GCTGGACTGGGCCAAGGCCCACGGCGCGCTGGGCACCGGGCCCTCGGCGACCCTCAGCGAACGCGGCGAACA
GAGCTACGCCGACCTGGTGAAACCCTGGATGAACCGCATGACCCACGCGCGCGGGTTGTTCATCCATGCCTA
CTCGGTGGACTCGGAGGAAGACTTCAAGGCCCTAGGTGCGGCCGGCGTCGACGGTTTCTTCACCAACCGCAC
CTCGGAACTGCTGAAGTTCCAGGGCCGCCCGGCGGCGCAAGACATGGACGCGCTGCTGCGCCGGCACGGCTA
CTGAGCCTCGGCCTGGCCGGCGGATGA
Translation:
MKKKEGKAPHAAKILARNIQDPGPPRPDGGARRPGRGAVRQGPQRRRRRALAGGHRPPRRLVRRPRGNRRGL
PTGPRPRRRLPGSRRAAQPRRRTGRPPRRHPGAHHRRRRGLPGTRQGPGEQLHSRRTQAPGRRLLVQSRLPR
ARPARLRRPAHPHPRRDARHRRGRRQQAGPVPGDQGTGAIPRHRRRPAQAAGTPRLAATPRARRRRACRRGP
RQWPGDPADLREEQPGTAARKHAASAEDSPAVARRRLPGSPFASDLQGIRGNRQGGLLRQAGSEVRSRVRRL
AGLGQGPRRAGHRALGDPQRTRRTELRRPGETLDEPHDPRARVVHPCLLGGLGGRLQGPRCGRRRRFLHQPH
LGTAEVPGPPGGARHGRAAAPARLLSLGLAGG*
AnnotationID:5983GeneID:5982
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:58
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:15830
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29085
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48984How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1907987Stop: 1909165
Length: 1179
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGAAAAAGAAAGAAGGAAAGGCGCCTCATGCGGCAAAGATTCTGGCAAGGAACATTCAAGACCCTGGGCCT
CCTCGGCCTGACGGCGGGGCTCGCCGCCCAGGCCGCGGAGCCGTCCGGCAAGGCCCTCAGCGCCGCCGCCGG
CGTGCCCTGGCCGGCGGTCATCGCCCACCGCGGCGCCTCGTACGACGCCCCCGAGGAAACCGCCGCGGCCTA
CCTACTGGCCCGCGACCTCGGCGCCGACTACCTGGAAGCCGACGTGCAGCGCAGCCGCGACGGCGTACTGGT
CGCCCTCCACGACGACACCCTGGAGCGCACCACCGACGTCGCCGAGGTCTTCCCGGGACGCGCCAAGGACCC
GGTGAGCAGCTTCACTCTCGCCGAACTCAAGCGCCTGGACGCCGGCTCCTGGTTCAATCGCGCCTTCCCCGA
GCGCGCCCGGCCCGGCTTCGTCGGCCTGCGCATCCTCACCCTCGACGAGATGCTCGACATCGCCGAGGGCGG
CGCCAACAAGCCGGGCCTGTACCTGGAGACCAAGGTACCGGCGCAATTCCCCGGCATCGAAGACGACCTGCG
CAAGCTGCTGGAACGCCGCGGCTGGCTGCAACCCCGCGAGCGCGCCGCCGCCGGGCATGTCGACGTGGCCCA
CGGCAATGGCCGGGTGATCCTGCAGACCTTCGAGAAGAGCAGCCTGGAACTGCTGCAAGAAAGCATGCCGCA
AGTGCCGAAGATTCTCCTGCTGTGGCTCGGCGACGGTTACCTGGAAGCCCGTTCGCCAGTGACCTTCAAGGA
ATCCGGGGAAACCGACAAGGCGGCCTTCTACGCCAGGCAGGAAGTGAAGTCCGAAGCCGAGTTCGGCGCCTG
GCTGGACTGGGCCAAGGCCCACGGCGCGCTGGGCACCGGGCCCTCGGCGACCCTCAGCGAACGCGGCGAACA
GAGCTACGCCGACCTGGTGAAACCCTGGATGAACCGCATGACCCACGCGCGCGGGTTGTTCATCCATGCCTA
CTCGGTGGACTCGGAGGAAGACTTCAAGGCCCTAGGTGCGGCCGGCGTCGACGGTTTCTTCACCAACCGCAC
CTCGGAACTGCTGAAGTTCCAGGGCCGCCCGGCGGCGCAAGACATGGACGCGCTGCTGCGCCGGCACGGCTA
CTGAGCCTCGGCCTGGCCGGCGGATGA