ViewGene
Locus Name:
GeneID:
Location:

GeneID:5981
TrivialName: PA14_34310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34310
PAO1 Ortholog Locus:
Sequence Length:1239
Protein Length:412
Start: 3050165
Stop: 3051403
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAA56670.1| (U08850) transposase [Rhodococcus sp.]
Identities = 110/356 (30%), Positives = 140/356 (39%), Gaps = 38/356 (10%)
Sequence:
GTGGCGGTCGAGACCGAGTTCGGCGAGACAGGCGCGGCTGCCGCCAAGCTCGATCAGCTTGCTGCCGGCCAA
CAGGGCGACCTCGGTGGTCAGCGCGCGGGCTTCGGCGACGGCGATCGAGGCGGCCGCCACGCTTTCCGCGTC
CGGCTCGGCGGTGGCCCGGTCGAGCACCCGCCCGGCACGCTCCAGCAGCGCTTCGGCGGCGTGCAGGCGGAT
CGCCAGGCGGCCGATCTCGTGGATGGTCAGTGGGTCGTCGCTGGCCTTGTCGACGCCGGAGTCGACCCAGGG
CCGGGCGCGCTCGCGGACGAAACGCAGGGTGTCCTCGAAGGCGCCGCGGGCGATCCCGGCGTCGATCGCCGC
GTGGAGGATCTGCGCCAGCGGGCCGACGGTGGTCGGGCGCTCGAAGGCGTCCTGGAACGAGACCACGTCCTC
GGCGGCCACCGCTACCCGGTCGAACAGCGCCGAACCGCTGCCGGTGGTGCGTTGACCGAAGCCGGACCAGTC
GTCGACGATTTCCAGCCCGGCGCTGTCGCGCGGGACGAAGGCCAGTTGCTGGCGGCCCTCGTCGTCCACCGC
CAGGGTCGGCACCCGCTGCGCGTAGAGTGCGCCGGTGCAGTAGAACTTGCGCCCGTCCAGGCGGTAGCCGTC
GCCGTCGGCGCGCAGGCGGGTGCGGCGCTCGCTGGCGGTACGCGTGCCGATCTCGGCCAGGGCGTTGCCGAA
ACGCTCGCCGGCCAGGGCGGCGCCGAACAGGCGACCTTTCTGCGCCGGCGAGCCGTTCACCCGCAGCACTTC
GAGGGCGTAGAAATGGTTCTGCGGAATCTGCCCCAGGGAACTGTCGGCGGCGCTGACGATCGCCACCACCTT
CGCCAGGGTCACCCGCGAGACGCCGGCCCCGCCGTATTCGCGGGGCACCGCGATGCCCCACAGGCCGGAGCG
GGAGAACAGTTCCAGTTCTTCCAGCGGCAGGCGCCGCTCGCGGTCGCGCTGGATGCTTTCGCGGGCGAACAG
GGCGGCCAGCTCGCGGGCCGTTTCCAGGGCTTCGTCGTCGCTGCCGATGCGATGGGCAGCGGCCGTGGGATT
GTCGCGCGTAGCGTGTGCGAGGCTCATCGGGCGCTCCTCAGATCCATGAGTGACGCGCCGGACGGGCGCCGT
TCAGGTAGTAGTCGCCGACCGCGTGGACCTTCCAGCGTACCGGGTCGTGCAGGGTGTGGGTGCGGGCGTTGc
gCCAGTGCCGGttgA
Translation:
MAVETEFGETGAAAAKLDQLAAGQQGDLGGQRAGFGDGDRGGRHAFRVRLGGGPVEHPPGTLQQRFGGVQAD
RQAADLVDGQWVVAGLVDAGVDPGPGALADETQGVLEGAAGDPGVDRRVEDLRQRADGGRALEGVLERDHVL
GGHRYPVEQRRTAAGGALTEAGPVVDDFQPGAVARDEGQLLAALVVHRQGRHPLRVECAGAVELAPVQAVAV
AVGAQAGAALAGGTRADLGQGVAETLAGQGGAEQATFLRRRAVHPQHFEGVEMVLRNLPQGTVGGADDRHHL
RQGHPRDAGPAVFAGHRDAPQAGAGEQFQFFQRQAPLAVALDAFAGEQGGQLAGRFQGFVVAADAMGSGRGI
VARSVCEAHRALLRSMSDAPDGRRSGSSRRPRGPSSVPGRAGCGCGRCASAG*
AnnotationID:5982GeneID:5981
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:41
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15828




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29083




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48983How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1903751Stop: 1902513

          
Length: 1239


          
Start Codon: GTGTruncated Start:

          
Stop Codon: tgATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold2_revised_gene3262 related to: gi|595290|gb|AAA56670.1| (U08850) transposase [Rhodococcus sp.] prf||2119215D transposase [Rhodococcus sp.]Homolog Bit Score 318.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3262 related to: gi|595290|gb|AAA56670.1| (U08850) transposase [Rhodococcus sp.] prf||2119215D transposase [Rhodococcus sp.] (BLASTP 318)

          
GC ORF Sequence

           
GTGGCGGTCGAGACCGAGTTCGGCGAGACAGGCGCGGCTGCCGCCAAGCTCGATCAGCTTGCTGCCGGCCAA 
CAGGGCGACCTCGGTGGTCAGCGCGCGGGCTTCGGCGACGGCGATCGAGGCGGCCGCCACGCTTTCCGCGTC 
CGGCTCGGCGGTGGCCCGGTCGAGCACCCGCCCGGCACGCTCCAGCAGCGCTTCGGCGGCGTGCAGGCGGAT 
CGCCAGGCGGCCGATCTCGTGGATGGTCAGTGGGTCGTCGCTGGCCTTGTCGACGCCGGAGTCGACCCAGGG 
CCGGGCGCGCTCGCGGACGAAACGCAGGGTGTCCTCGAAGGCGCCGCGGGCGATCCCGGCGTCGATCGCCGC 
GTGGAGGATCTGCGCCAGCGGGCCGACGGTGGTCGGGCGCTCGAAGGCGTCCTGGAACGAGACCACGTCCTC 
GGCGGCCACCGCTACCCGGTCGAACAGCGCCGAACCGCTGCCGGTGGTGCGTTGACCGAAGCCGGACCAGTC 
GTCGACGATTTCCAGCCCGGCGCTGTCGCGCGGGACGAAGGCCAGTTGCTGGCGGCCCTCGTCGTCCACCGC 
CAGGGTCGGCACCCGCTGCGCGTAGAGTGCGCCGGTGCAGTAGAACTTGCGCCCGTCCAGGCGGTAGCCGTC 
GCCGTCGGCGCGCAGGCGGGTGCGGCGCTCGCTGGCGGTACGCGTGCCGATCTCGGCCAGGGCGTTGCCGAA 
ACGCTCGCCGGCCAGGGCGGCGCCGAACAGGCGACCTTTCTGCGCCGGCGAGCCGTTCACCCGCAGCACTTC 
GAGGGCGTAGAAATGGTTCTGCGGAATCTGCCCCAGGGAACTGTCGGCGGCGCTGACGATCGCCACCACCTT 
CGCCAGGGTCACCCGCGAGACGCCGGCCCCGCCGTATTCGCGGGGCACCGCGATGCCCCACAGGCCGGAGCG 
GGAGAACAGTTCCAGTTCTTCCAGCGGCAGGCGCCGCTCGCGGTCGCGCTGGATGCTTTCGCGGGCGAACAG 
GGCGGCCAGCTCGCGGGCCGTTTCCAGGGCTTCGTCGTCGCTGCCGATGCGATGGGCAGCGGCCGTGGGATT 
GTCGCGCGTAGCGTGTGCGAGGCTCATCGGGCGCTCCTCAGATCCATGAGTGACGCGCCGGACGGGCGCCGT 
TCAGGTAGTAGTCGCCGACCGCGTGGACCTTCCAGCGTACCGGGTCGTGCAGGGTGTGGGTGCGGGCGTTGc 
gCCAGTGCCGGttgA