ViewGene

Locus Name:
GeneID:
Location:

GeneID:5980
TrivialName: PA14_34380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34380
PAO1 Ortholog Locus:
Sequence Length:1635
Protein Length:544
Start: 3058557
Stop: 3060191
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAD00241.1| (U74323) glucose-binding protein [Pseudomonas putida]
Identities = 60/214 (28%), Positives = 78/214 (36%), Gaps = 29/214 (13%)
Sequence:
ATGGCCGCGCAGGAAGCCCATCTTCGGCGTGCCGAGGAAGCCGGCGACGAACAGGTTGGCCGGATGGTGGTA
AAGCTCCAGCGGCGAGCCGACCTGCTCGACGCGTCCGCCGTTGAGCACCACGACCTTGTCCGCCAGGGTCAT
CGCCTCGACCTGGTCGTGGGTCACGTAGATCATGGTCGCCGCCAGTTCCTGGTGCAGCCGCGCCAGTTCCAG
GCGCATCTGCACGCGCAGGGCGGCGTCGAGGTTGGACAGCGGTTCGTCGAAGAGGAATATCTTCGGGTTGCG
CACGATCGCCCGGCCGATCGCCACTCGCTGCCGCTGGCCGCCGGAGAGCTGGCGCGGCTTGCGCTCCAGCAG
CGCTTGCAGTTCGAGGATGCGTGCGGCGGCGTCGACCTTGGCGGCGACCTCGCGCTTGTCGACGCCGGCCAG
GTCGAGGGCGAAGGAGAGGTTCCTGCGCACCGTCATGTGCGGGTACAGCGCGTAGGTCTGGAAGACCATCGC
CAGGTCGCGTTTCGCCGGCGGGGTGTCGGTGATGTCCGTGCCGTCGAGGGCGATGCTGCCGCCGCTGGCCTC
TTCGAGGCCGGCGATCAGGCGCAGCAGGGTCGACTTGCCGCAGCCGGAGGGGCCGACGAAGACCACGAACTC
GCGGTCGCGGACGTCGAGGTCGATGCCCTTGATGATGGCCTGGCCGTCGAAGCCTTTCTGCAGGTTGCGGAT
CTTGAGATCAGCCATGGCGGAATACCTCCGTGGACGAAAGGATGGGGATGCGCTTCATTTCACGGCGCCGAA
GGAAAGGCCGCGTACCAGCTGCTTCTGGCTGATCCAGCCGAAGACCAGGATCGGCGCGCAGGCGAGGGTGGA
GACGGCCGAGAGCTTGGCCCAGAACAGTCCTTCGGGGCTGGAATAGGAGGCGACCAGGGCGGTCAGCGGGGC
GGCGGCCGAGGAGGTCAGGTTGAGCGACCAGAAGGCCTCGTTCCAGCACAGGATCAGCGACAGCAGGAGGGT
CGAGGCGAGCCCGCCGCGGGCGATCGGCAGCAGCACGCGGACGATCTCCTGCCAGGTGCCGGCGCCGTCCAG
GCGCGCCGCTTCGAGGATGTCCACGGGGATGTCCTTGAAGTAGGTGTACACCATCCAGACCACGATCGGCAG
GTTGATCAGGGTGTAGACGATGATCAGCGCCAGCCGCGAATCGAGCAGGCCGAACTGCTTGGCCAGCAGGTA
GATCGGCATCAGTACGCCGACCGGCGGAAGCATCTTGGTCGACAGCATCCAGAGCAGCGTGCGCTTGGTGTG
GCGGGTCTCGAAGAAGGCCATGGAGTAGGCCGCCGGCACCGCGACGAGCATGCACAGGAGGGTCGCCGAGGA
GGAGATCAGCAGCGAGTTCCAGGCATAGGCGAAGTAGTCGCTGCGCTCGTTGATGTGCAGGTAGTTCTCCAG
GGTCGGCTGGAAGATGAACTGCGGCGGCGTGGCGAAGGCGTCGATCTCGCTCTTGAAGCTGGTCAGCAGCAT
CCAGAAGATCGGGAAGAACAGCAGCAGGGCGATGCCCCAGCAGAGCAGGCCGAGCAGGCCGTTGCGCAGGCG
GCGGGATTGCTTGAGTGTCAGCATGGCGGGTTCCTCAGCTGCGCTCGGTAA
Translation:
MAAQEAHLRRAEEAGDEQVGRMVVKLQRRADLLDASAVEHHDLVRQGHRLDLVVGHVDHGRRQFLVQPRQFQ
AHLHAQGGVEVGQRFVEEEYLRVAHDRPADRHSLPLAAGELARLALQQRLQFEDACGGVDLGGDLALVDAGQ
VEGEGEVPAHRHVRVQRVGLEDHRQVAFRRRGVGDVRAVEGDAAAAGLFEAGDQAQQGRLAAAGGADEDHEL
AVADVEVDALDDGLAVEAFLQVADLEISHGGIPPWTKGWGCASFHGAEGKAAYQLLLADPAEDQDRRAGEGG
DGRELGPEQSFGAGIGGDQGGQRGGGRGGQVERPEGLVPAQDQRQQEGRGEPAAGDRQQHADDLLPGAGAVQ
ARRFEDVHGDVLEVGVHHPDHDRQVDQGVDDDQRQPRIEQAELLGQQVDRHQYADRRKHLGRQHPEQRALGV
AGLEEGHGVGRRHRDEHAQEGRRGGDQQRVPGIGEVVAALVDVQVVLQGRLEDELRRRGEGVDLALEAGQQH
PEDREEQQQGDAPAEQAEQAVAQAAGLLECQHGGFLSCAR*
AnnotationID:5981GeneID:5980
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 15:03:59
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:11861
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29081
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48982How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1895359Stop: 1893725
Length: 1635
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGCCGCGCAGGAAGCCCATCTTCGGCGTGCCGAGGAAGCCGGCGACGAACAGGTTGGCCGGATGGTGGTA
AAGCTCCAGCGGCGAGCCGACCTGCTCGACGCGTCCGCCGTTGAGCACCACGACCTTGTCCGCCAGGGTCAT
CGCCTCGACCTGGTCGTGGGTCACGTAGATCATGGTCGCCGCCAGTTCCTGGTGCAGCCGCGCCAGTTCCAG
GCGCATCTGCACGCGCAGGGCGGCGTCGAGGTTGGACAGCGGTTCGTCGAAGAGGAATATCTTCGGGTTGCG
CACGATCGCCCGGCCGATCGCCACTCGCTGCCGCTGGCCGCCGGAGAGCTGGCGCGGCTTGCGCTCCAGCAG
CGCTTGCAGTTCGAGGATGCGTGCGGCGGCGTCGACCTTGGCGGCGACCTCGCGCTTGTCGACGCCGGCCAG
GTCGAGGGCGAAGGAGAGGTTCCTGCGCACCGTCATGTGCGGGTACAGCGCGTAGGTCTGGAAGACCATCGC
CAGGTCGCGTTTCGCCGGCGGGGTGTCGGTGATGTCCGTGCCGTCGAGGGCGATGCTGCCGCCGCTGGCCTC
TTCGAGGCCGGCGATCAGGCGCAGCAGGGTCGACTTGCCGCAGCCGGAGGGGCCGACGAAGACCACGAACTC
GCGGTCGCGGACGTCGAGGTCGATGCCCTTGATGATGGCCTGGCCGTCGAAGCCTTTCTGCAGGTTGCGGAT
CTTGAGATCAGCCATGGCGGAATACCTCCGTGGACGAAAGGATGGGGATGCGCTTCATTTCACGGCGCCGAA
GGAAAGGCCGCGTACCAGCTGCTTCTGGCTGATCCAGCCGAAGACCAGGATCGGCGCGCAGGCGAGGGTGGA
GACGGCCGAGAGCTTGGCCCAGAACAGTCCTTCGGGGCTGGAATAGGAGGCGACCAGGGCGGTCAGCGGGGC
GGCGGCCGAGGAGGTCAGGTTGAGCGACCAGAAGGCCTCGTTCCAGCACAGGATCAGCGACAGCAGGAGGGT
CGAGGCGAGCCCGCCGCGGGCGATCGGCAGCAGCACGCGGACGATCTCCTGCCAGGTGCCGGCGCCGTCCAG
GCGCGCCGCTTCGAGGATGTCCACGGGGATGTCCTTGAAGTAGGTGTACACCATCCAGACCACGATCGGCAG
GTTGATCAGGGTGTAGACGATGATCAGCGCCAGCCGCGAATCGAGCAGGCCGAACTGCTTGGCCAGCAGGTA
GATCGGCATCAGTACGCCGACCGGCGGAAGCATCTTGGTCGACAGCATCCAGAGCAGCGTGCGCTTGGTGTG
GCGGGTCTCGAAGAAGGCCATGGAGTAGGCCGCCGGCACCGCGACGAGCATGCACAGGAGGGTCGCCGAGGA
GGAGATCAGCAGCGAGTTCCAGGCATAGGCGAAGTAGTCGCTGCGCTCGTTGATGTGCAGGTAGTTCTCCAG
GGTCGGCTGGAAGATGAACTGCGGCGGCGTGGCGAAGGCGTCGATCTCGCTCTTGAAGCTGGTCAGCAGCAT
CCAGAAGATCGGGAAGAACAGCAGCAGGGCGATGCCCCAGCAGAGCAGGCCGAGCAGGCCGTTGCGCAGGCG
GCGGGATTGCTTGAGTGTCAGCATGGCGGGTTCCTCAGCTGCGCTCGGTAA