ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5979

TrivialName: PA14_34400

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_34400

PAO1 Ortholog Locus:

Sequence Length: 2337

Protein Length: 778

Start: 3060163

Stop: 3062499

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK22724.1| (AE005749) hypothetical protein [Caulobacter crescentus CB15] Identities = 188/741 (25%), Positives = 267/741 (36%), Gaps = 175/741 (23%)

Sequence:

ATGGCGGGTTCCTCAGCTGCGCTCGGTAAGGTTCTTGCCGATCATCCGCACCAGCACGATGGCGGCGATATT
GGCGATCAGCACCGCGATCAGGCCCCCGGCCGAGGCCATGCCGACATCGAACTGCAGCAGCGCCTGGTTGTA
GATCAGGTAGGCGAGGTTGGTCGATTCGTAGCCGGGGCCGCCGCTGGTGGTGGTGAAGATCTCGGCGAACAC
CGAGAGCAGGAAGATCGTCTCGATCATCAGCACCACCGCGATGGGCCGCGCCAGGTGCGGCAGGGTCAGGTG
CCAGAAGATCGCCAGCGGACCGGCGCCGTCGAGGCGGGCGGCCTCCTTCTGCTCCTGGTCGAGGGACTGCAT
GGCGGTCATCAGGATGAGGATGGCGAAGGGCAGCCATTGCCAGGAGACGATGAGGATGATCGACAGCAGCGG
ATAGTGCGCCAGCCAATCCACCGGCTCGGCGCCGAACAGGCGCCAGACGGCGGCGAGGATGCCCGAGACCGG
GTGGAAGATCAGGTTCTTCCAGAGCAGCGCGCTCACCGTCGGCATGATGAAGAACGGCGAGATCAGCAACAC
CCGCACCGCGCCGCGACCGAAGAACTCGCCGGCCTCCAGCAGCGCGGCGATGAGCACGCCGAACGCCACGCT
GATCGCCAGCACGCTGCCCACCAGCAGCAGGGTGTTCAGCGCGCCGGGCAGGAAGCCGGCGTCGGTGACGAA
GAAGGTGAAGTTCTCCACGCCGACGAAGGCATTCTCGCCGGGATACAGCAGGTTGTAGCGGATCAGCGAGAA
ATACAGGGTCATGCCCAGGGGCACGATCATCCACAACAGCAGCAGCGCCACCGAGGGGCTGACCAGGAGCCA
GCCGGGTCCGCGCCGGCGGCGCTGGAGGCGACGGTGGGCGGGACGGGCCGGGAGCGGGGTATCGAGGGCCGA
GGTGTTCATGGCGACTCCGTCTGGATCTTCAAGGGCAAGCGCTCGAGCAGCGCCGCGCCGGGCGCGGCTGCG
CCCGGCGGCGGACTACTTCGGATAGCCGGCGCGCTTCATCTCGCGGGCGGTGCTCTGCTGCGCGGCGGCGAG
CGCCTGGTCGCTGCTCATCTGCCCGGTGAGGGCGGCGGAGAACAGCTTGCCGACCTGGGTGCCGATGGCCTG
GAACTCGGGGATGGTGACCAACTGGATGCCGACGTAGGGCACCGGCTTCAGCGTCGGATGGTTGGGATCGAC
GCGCTTCAGCGATTCCAGGGTGACCCGCGCGAACGGCGCGGCGGCCAGGTAGGCCTCGCTGTAGGTCGAGGC
GCGGGTGCCGGGCGGCACGTTGGCCACGCCTTCCCTGTCCGCCACCAGCTTGCCGTACGCCTGCGAGGTGGC
CCAGGTGGCGAAGGCCTTCGCCGCGTCCTTGGCGCGCGAGCTGGCGGGAATCGCCAGGGCCCAGGAATACAG
CCAGGAGGCGCCCTTGTCGGTGACTTCCCGGGGGGCGAAGGCGAAGCCGGTGGCGTCGGCGACCTTGCTCTG
GCTCTTGTCGGTGACGAACGAACCGGCGACGCTGGCGTCCACCCAGATCGCGCACTTGCCGCTGTTGAACAG
CGCCAGGTTCTCGTTGAAACCGTTGCTGGAGGCGCCGGGCGGGCCGTACCGCTTGAGGGTGGAGACATAGAA
GTCGAGAGCCTTCTTCCATTCGCCGCCGCTGAATTCGGGCTGCCATCGCTCGTCGAACCAGCGTGCGCCGAA
GGCGTTGGCCAGGGTGCCGATCAACGCCATGTTCTCGCCCCAGCCGGCCTTGCCGCGCAGGCAGATGCCGTA
CTGGCCCTGGTCCGGGCGGTTGAGCCTGGCGGCGAACTCGCCGAGCTGGGTCCAGGTCGGTTGCTCGGGCAT
CCGCAGCCCGGCCTGCTGGAACAGGTCCTTGCGGTAGTAGGTGATCGAGGCTTCGGCGTAGAACGGCAGGGC
GTACAGCGTGCCCTTGACGGAGAGACCGTCGCGCACCGAGGGCAACAGGTCGTCCAGGGCGTAGTCGGCGGG
CAGCCCGCTCATCGGCTCCAGCCAGCCCTTGGCGCCCCACAGCGCGGCTTCGTACATGCCGATGGTGAGCAG
GTCGAACTGTCCGCCCTGGGTGGCGATGTCGGTGGTCAGGCGCTGGCGCAGGACGTTCTCTTCGAGCACCAC
CCATTTCAGCGAGATGTCCGGGTGGCTTTCCTCGAACACCTTGGACAGGCGCTGCATGCGGATCATGTCGTT
GTTGTTGACCGTGGCGATGGTCAGGGTCTCGGCGCCCTGGGCCAGCAGCGGCAGGGCGAGGCAGGCGGCGGC
CAGGCAGGCCTTGATCGAGTCGTTCATCGGTGA

Translation:

MAGSSAALGKVLADHPHQHDGGDIGDQHRDQAPGRGHADIELQQRLVVDQVGEVGRFVAGAAAGGGEDLGEH
REQEDRLDHQHHRDGPRQVRQGQVPEDRQRTGAVEAGGLLLLLVEGLHGGHQDEDGEGQPLPGDDEDDRQQR
IVRQPIHRLGAEQAPDGGEDARDRVEDQVLPEQRAHRRHDEERRDQQHPHRAATEELAGLQQRGDEHAERHA
DRQHAAHQQQGVQRAGQEAGVGDEEGEVLHADEGILAGIQQVVADQREIQGHAQGHDHPQQQQRHRGADQEP
AGSAPAALEATVGGTGRERGIEGRGVHGDSVWIFKGKRSSSAAPGAAAPGGGLLRIAGALHLAGGALLRGGE
RLVAAHLPGEGGGEQLADLGADGLELGDGDQLDADVGHRLQRRMVGIDALQRFQGDPRERRGGQVGLAVGRG
AGAGRHVGHAFPVRHQLAVRLRGGPGGEGLRRVLGARAGGNRQGPGIQPGGALVGDFPGGEGEAGGVGDLAL
ALVGDERTGDAGVHPDRALAAVEQRQVLVETVAGGAGRAVPLEGGDIEVESLLPFAAAEFGLPSLVEPACAE
GVGQGADQRHVLAPAGLAAQADAVLALVRAVEPGGELAELGPGRLLGHPQPGLLEQVLAVVGDRGFGVERQG
VQRALDGETVAHRGQQVVQGVVGGQPAHRLQPALGAPQRGFVHADGEQVELSALGGDVGGQALAQDVLFEHH
PFQRDVRVAFLEHLGQALHADHVVVVDRGDGQGLGALGQQRQGEAGGGQAGLDRVVHR*

AnnotationID:5980 GeneID:5979

AnnotatorUID: diggins

Modification Date/Time: 2004-06-06 10:10:37

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:11859

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29079

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32458

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 5979_cdd.html

URL:

GC ORFID: `48981`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `1893753`	Stop: `1891417`
Length: `2337`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGCGGGTTCCTCAGCTGCGCTCGGTAAGGTTCTTGCCGATCATCCGCACCAGCACGATGGCGGCGATATT GGCGATCAGCACCGCGATCAGGCCCCCGGCCGAGGCCATGCCGACATCGAACTGCAGCAGCGCCTGGTTGTA GATCAGGTAGGCGAGGTTGGTCGATTCGTAGCCGGGGCCGCCGCTGGTGGTGGTGAAGATCTCGGCGAACAC CGAGAGCAGGAAGATCGTCTCGATCATCAGCACCACCGCGATGGGCCGCGCCAGGTGCGGCAGGGTCAGGTG CCAGAAGATCGCCAGCGGACCGGCGCCGTCGAGGCGGGCGGCCTCCTTCTGCTCCTGGTCGAGGGACTGCAT GGCGGTCATCAGGATGAGGATGGCGAAGGGCAGCCATTGCCAGGAGACGATGAGGATGATCGACAGCAGCGG ATAGTGCGCCAGCCAATCCACCGGCTCGGCGCCGAACAGGCGCCAGACGGCGGCGAGGATGCCCGAGACCGG GTGGAAGATCAGGTTCTTCCAGAGCAGCGCGCTCACCGTCGGCATGATGAAGAACGGCGAGATCAGCAACAC CCGCACCGCGCCGCGACCGAAGAACTCGCCGGCCTCCAGCAGCGCGGCGATGAGCACGCCGAACGCCACGCT GATCGCCAGCACGCTGCCCACCAGCAGCAGGGTGTTCAGCGCGCCGGGCAGGAAGCCGGCGTCGGTGACGAA GAAGGTGAAGTTCTCCACGCCGACGAAGGCATTCTCGCCGGGATACAGCAGGTTGTAGCGGATCAGCGAGAA ATACAGGGTCATGCCCAGGGGCACGATCATCCACAACAGCAGCAGCGCCACCGAGGGGCTGACCAGGAGCCA GCCGGGTCCGCGCCGGCGGCGCTGGAGGCGACGGTGGGCGGGACGGGCCGGGAGCGGGGTATCGAGGGCCGA GGTGTTCATGGCGACTCCGTCTGGATCTTCAAGGGCAAGCGCTCGAGCAGCGCCGCGCCGGGCGCGGCTGCG CCCGGCGGCGGACTACTTCGGATAGCCGGCGCGCTTCATCTCGCGGGCGGTGCTCTGCTGCGCGGCGGCGAG CGCCTGGTCGCTGCTCATCTGCCCGGTGAGGGCGGCGGAGAACAGCTTGCCGACCTGGGTGCCGATGGCCTG GAACTCGGGGATGGTGACCAACTGGATGCCGACGTAGGGCACCGGCTTCAGCGTCGGATGGTTGGGATCGAC GCGCTTCAGCGATTCCAGGGTGACCCGCGCGAACGGCGCGGCGGCCAGGTAGGCCTCGCTGTAGGTCGAGGC GCGGGTGCCGGGCGGCACGTTGGCCACGCCTTCCCTGTCCGCCACCAGCTTGCCGTACGCCTGCGAGGTGGC CCAGGTGGCGAAGGCCTTCGCCGCGTCCTTGGCGCGCGAGCTGGCGGGAATCGCCAGGGCCCAGGAATACAG CCAGGAGGCGCCCTTGTCGGTGACTTCCCGGGGGGCGAAGGCGAAGCCGGTGGCGTCGGCGACCTTGCTCTG GCTCTTGTCGGTGACGAACGAACCGGCGACGCTGGCGTCCACCCAGATCGCGCACTTGCCGCTGTTGAACAG CGCCAGGTTCTCGTTGAAACCGTTGCTGGAGGCGCCGGGCGGGCCGTACCGCTTGAGGGTGGAGACATAGAA GTCGAGAGCCTTCTTCCATTCGCCGCCGCTGAATTCGGGCTGCCATCGCTCGTCGAACCAGCGTGCGCCGAA GGCGTTGGCCAGGGTGCCGATCAACGCCATGTTCTCGCCCCAGCCGGCCTTGCCGCGCAGGCAGATGCCGTA CTGGCCCTGGTCCGGGCGGTTGAGCCTGGCGGCGAACTCGCCGAGCTGGGTCCAGGTCGGTTGCTCGGGCAT CCGCAGCCCGGCCTGCTGGAACAGGTCCTTGCGGTAGTAGGTGATCGAGGCTTCGGCGTAGAACGGCAGGGC GTACAGCGTGCCCTTGACGGAGAGACCGTCGCGCACCGAGGGCAACAGGTCGTCCAGGGCGTAGTCGGCGGG CAGCCCGCTCATCGGCTCCAGCCAGCCCTTGGCGCCCCACAGCGCGGCTTCGTACATGCCGATGGTGAGCAG GTCGAACTGTCCGCCCTGGGTGGCGATGTCGGTGGTCAGGCGCTGGCGCAGGACGTTCTCTTCGAGCACCAC CCATTTCAGCGAGATGTCCGGGTGGCTTTCCTCGAACACCTTGGACAGGCGCTGCATGCGGATCATGTCGTT GTTGTTGACCGTGGCGATGGTCAGGGTCTCGGCGCCCTGGGCCAGCAGCGGCAGGGCGAGGCAGGCGGCGGC CAGGCAGGCCTTGATCGAGTCGTTCATCGGTGA