ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5977

TrivialName: PA14_34470

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_34470

PAO1 Ortholog Locus:

Sequence Length: 1485

Protein Length: 494

Start: 3066276

Stop: 3064792

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK75846.1| (AE007470) cell wall surface anchor family protein [Streptococcus pneumoniae TIGR4] Identities = 70/299 (23%), Positives = 124/299 (41%), Gaps = 21/299 (7%)

Sequence:

ATGCGGATGCGGAACAGGCGTGCCGGCTGGCTGGCGAACTCGCCGCTGGCCAGTCCGGCGTGCAGCGCCGCC
ACGTGTCCGTCGAGGGTTTCGCGCTGTGCCGCCAGCTCACCATCCAGCAGCGAACGACTGCCGCCCAGGTGC
CGCTGCACTTCGTCCAGTGCGCGGCGCGCCAGGCCGATGGCCATGCCGCATTGCAGGCCGAGGAAGGCCGGG
CGCACCCGTGGCAGGAACTGCCGGGCGTCGTCGTGCAACAGCCAGTCGCGCCCGACCGCCACCGCGCGCAGG
TCAAGGGCGGCGGTGTTGCTGCATTGCAGGCCGAGCAGGCGCAGGTCCGCCGAGCGCTGCAAGCCGGCGAGG
CCTTCGGGAATCGCCAGGACGAAGGGACTGCCACCCTCCCCTCGTTCGATCGCCGCCGCCACCACGAAATCG
CCACTGCGCAGGTTGGTCACCCACGGCAGGCGACCGTCCAGGCGCCAGCCGGCCTCCTCCGCGTGCGCCACC
ACCTGCAGCGCCTCGATCCCGGAAAGGAACTTCATCGCGTTGGACAGCCCGGTGGCGCCGGCCAGGCGGCCG
GCCAGCAGGTCGCCGAGCAGGCGTTGGCGCAGTTCCTGGTTGGGACTCTGCAACAGGTACTCGATGAAGGCG
CGCTGGCCCCAGAAGACGAACGCCGCGGTCAGCGAGCGCGCCGCCACCGCGGCCACCCGCTCCACCGCGTCG
GCGAGCGTGCCGCCGGCGCCGCCGAGGCGTTCCTCCACCGCCACGCCGAGCACGCCGGCGGCGGCCAGGCGC
GGCAGCAGCGCGGCGGGATCGGCGTCGCCGCGGTCGAGGGCGTCGGCCTGGCGGTCGAGCCAGTCGCTCAGG
GTCGGGTCAAGCATGGTCGTCACTCCTTGCGCCGGCGCGGCACGCCGCCCGGCAAGCGCAGGCTCAGGCCTG
CGGGTTGGTCCAGCGATATTGCTCCAGCTCGGCATTGAGCGGCGTGCGGGCGAACACGTTGGCGAAGTTGCA
GAGCGTCGCCAGGCTCACCCCGAGGATCACTTCCAGGGCCTGGGCCTGGTCGAAACCAGCGGCGCGGAAGGC
TTCGAACTGTTCGTCGGTGACCGCGCCGCGACTGGCGATCACCGCGCGGGTGAAGTCGGCCAGGGCTTCGTA
GCGGGCATCGGGCAGTTCGCCGCGGGCGCGCAGGGCCTCGATCACCGGCTCCGGCAGGCGCGCCTTGTTGCG
CGCCACCGCGGTGTGCCCGGCAACGCAGAAGTCGCAGCCATGGGTGGTGGCCGCCACCAGTTGCACCACTTC
CCGCTCGGGCAGGCCGAGGCTGGCCTTGGCGTTCAGCCCGGACACGGTGAGGTAGGTTTCCAGGGCGGCCGG
CGCATTGGCCAGCACGCCGAGCAGATTCGGGATATAACCCGAGTTGTTCAGCGCGGTCTGGAGGAACGGACG
CGCCGCCTCGGGGGCGTTTTCCAGGGTGAGCACGGGAACGCGTGA

Translation:

MRMRNRRAGWLANSPLASPACSAATCPSRVSRCAASSPSSSERLPPRCRCTSSSARRARPMAMPHCRPRKAG
RTRGRNCRASSCNSQSRPTATARRSRAAVLLHCRPSRRRSAERCKPARPSGIARTKGLPPSPRSIAAATTKS
PLRRLVTHGRRPSRRQPASSACATTCSASIPERNFIALDSPVAPARRPASRSPSRRWRSSWLGLCNRYSMKA
RWPQKTNAAVSERAATAATRSTASASVPPAPPRRSSTATPSTPAAARRGSSAAGSASPRSRASAWRSSQSLR
VGSSMVVTPCAGAARRPASAGSGLRVGPAILLQLGIERRAGEHVGEVAERRQAHPEDHFQGLGLVETSGAEG
FELFVGDRAATGDHRAGEVGQGFVAGIGQFAAGAQGLDHRLRQARLVARHRGVPGNAEVAAMGGGRHQLHHF
PLGQAEAGLGVQPGHGEVGFQGGRRIGQHAEQIRDITRVVQRGLEERTRRLGGVFQGEHGNA*

AnnotationID:5978 GeneID:5977

AnnotatorUID: diggins

Modification Date/Time: 2004-06-06 10:10:23

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:11855

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29075

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32459

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 5977_cdd.html

URL:

GC ORFID: `48979`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `1887640`	Stop: `1889124`
Length: `1485`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCGGATGCGGAACAGGCGTGCCGGCTGGCTGGCGAACTCGCCGCTGGCCAGTCCGGCGTGCAGCGCCGCC ACGTGTCCGTCGAGGGTTTCGCGCTGTGCCGCCAGCTCACCATCCAGCAGCGAACGACTGCCGCCCAGGTGC CGCTGCACTTCGTCCAGTGCGCGGCGCGCCAGGCCGATGGCCATGCCGCATTGCAGGCCGAGGAAGGCCGGG CGCACCCGTGGCAGGAACTGCCGGGCGTCGTCGTGCAACAGCCAGTCGCGCCCGACCGCCACCGCGCGCAGG TCAAGGGCGGCGGTGTTGCTGCATTGCAGGCCGAGCAGGCGCAGGTCCGCCGAGCGCTGCAAGCCGGCGAGG CCTTCGGGAATCGCCAGGACGAAGGGACTGCCACCCTCCCCTCGTTCGATCGCCGCCGCCACCACGAAATCG CCACTGCGCAGGTTGGTCACCCACGGCAGGCGACCGTCCAGGCGCCAGCCGGCCTCCTCCGCGTGCGCCACC ACCTGCAGCGCCTCGATCCCGGAAAGGAACTTCATCGCGTTGGACAGCCCGGTGGCGCCGGCCAGGCGGCCG GCCAGCAGGTCGCCGAGCAGGCGTTGGCGCAGTTCCTGGTTGGGACTCTGCAACAGGTACTCGATGAAGGCG CGCTGGCCCCAGAAGACGAACGCCGCGGTCAGCGAGCGCGCCGCCACCGCGGCCACCCGCTCCACCGCGTCG GCGAGCGTGCCGCCGGCGCCGCCGAGGCGTTCCTCCACCGCCACGCCGAGCACGCCGGCGGCGGCCAGGCGC GGCAGCAGCGCGGCGGGATCGGCGTCGCCGCGGTCGAGGGCGTCGGCCTGGCGGTCGAGCCAGTCGCTCAGG GTCGGGTCAAGCATGGTCGTCACTCCTTGCGCCGGCGCGGCACGCCGCCCGGCAAGCGCAGGCTCAGGCCTG CGGGTTGGTCCAGCGATATTGCTCCAGCTCGGCATTGAGCGGCGTGCGGGCGAACACGTTGGCGAAGTTGCA GAGCGTCGCCAGGCTCACCCCGAGGATCACTTCCAGGGCCTGGGCCTGGTCGAAACCAGCGGCGCGGAAGGC TTCGAACTGTTCGTCGGTGACCGCGCCGCGACTGGCGATCACCGCGCGGGTGAAGTCGGCCAGGGCTTCGTA GCGGGCATCGGGCAGTTCGCCGCGGGCGCGCAGGGCCTCGATCACCGGCTCCGGCAGGCGCGCCTTGTTGCG CGCCACCGCGGTGTGCCCGGCAACGCAGAAGTCGCAGCCATGGGTGGTGGCCGCCACCAGTTGCACCACTTC CCGCTCGGGCAGGCCGAGGCTGGCCTTGGCGTTCAGCCCGGACACGGTGAGGTAGGTTTCCAGGGCGGCCGG CGCATTGGCCAGCACGCCGAGCAGATTCGGGATATAACCCGAGTTGTTCAGCGCGGTCTGGAGGAACGGACG CGCCGCCTCGGGGGCGTTTTCCAGGGTGAGCACGGGAACGCGTGA