ViewGene

Locus Name:
GeneID:
Location:

GeneID:5957
TrivialName: PA14_35260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35260
PAO1 Ortholog Locus:
Sequence Length:1770
Protein Length:589
Start: 3137135
Stop: 3135366
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens]
Identities = 145/513 (28%), Positives = 179/513 (34%), Gaps = 113/513 (22%)
Sequence:
TTGCGTGGCCTGCCACACCGCCAGGGACGGCAAGCCGTTCGCCGGGGGCCTGCCGATGGAAACGCCGATCGG
CGCGGTGTACTCGACCAACATCACCCCGGACCGCAAGACCGGCATCGGCGACTACAGCTTCGAGGACTTCGA
CCGTGCCGTGCGCCACGGCGTGGCCAGATCCGGCGACACCCTCTACCCGGCGATGCCCTACCCGTCCTACGC
GCGAGTCAGCGAAGCGGACATGCGCGCCCTCTACGCCTACTTCATGCATGGCGTGGAGCCGGTGGAGCAGCC
CAACAAGGCCAGCGACATCCCCTGGCCGCTGTCGATGCGCTGGCCGCTGGCATTCTGGCGCTGGACCTTCGC
TCCCGAGGTGAAGGACTTCCAGGCCGCCGCCGGGCAGGACCCGGTGCTGGCGCGCGGCGCCTACCTGGTCGA
AGGCCTTGGCCACTGTGGCGCCTGCCATACCCCGCGTGGGCTGGGCATGCAGGAGAAGGCCCTGGCGGCGAG
CGATGGCGCGGCCTACCTGTCCGGCAGCGCGCCGCTGGAGAACTGGATCGCCAAGAGCCTGCGCGGCGACCA
CCGGACCGGACTGGGCAGTTGGAGCGAAGCCGACCTGGTCAGCTTCCTGCGCACCGGCCGCAGCGAGCGCAG
CGCGGTGTTCGGCGGCATGTCCGACGTGGTGGTGCACAGCATGCAGTACATGACCGACGCCGACCTCACCGC
CATCGCCCGCTACCTCAAGTCGCTGCCGCCGGCGGACCCCTCCGACCAGCCGCACGTCTACGACGAGAGCGT
GGCCCAGGCACTGTTCCACGGCGACGACAGCAAGACCGGCGCGGCGCTCTACGTCGACAACTGCGGGGCCTG
CCACCGCACCGACGGCAAGGGCTATGCGCGGGTCTTCCCGGCCCTGGCCGGCAACCCGGTGGTGACCGGCAG
CGACCCGACCTCCCTGGTGCACATCGTGCTCAAGGGCGGCACCCTGCCGGCCACCCACCAGGCACCGTCGAG
CTTCACCATGCCGCCGTTCGGCTGGCGGATGAACGACCAGGAGATCGCCGACGTGGTCAACTTCATCCGCAC
CAGTTGGGGCAACCAGGCGCCGAGCGTCAGCGTCGACGAGGTCAAGCGCCTGCGCAAGGACACCGGCGCGGC
GGCGGTGGGCGACATTCCGCCGCCGGGACCGGCCGCGGCGGATCGCGGCTGAGCGCCAGGCCTCTGGCGAAA
CGCCATTCCAGCCCCTCTCCCGCTCGCGGGAGAGGGTTGGGGAGCGGGAGCGCGCCGTACCGGGCACGGCCC
TCCTCCTTCACTCATCACCCAAGCGCACATGCCGCCCCAGCTCGTCGAACAACGCGACCACCGAGCGCAACG
CCCGGCAGTCCGGACGGGTCAGCAGCCACAGGGCGCTGGCGCAGCCCTCGAGGTCGGCGTCCAGTACCCGCA
GGCCGTCGCCGTCGCGCAGCAGGTAGGCGGGGATCGCCGCCAGGCCGAGGCCGGCGCGGGCCATCTCGGAGA
CCGCCAGCACGCCGTTGCAGCGGTAGGCCGGCAATACCCCGGGATAGTGTCGACGACGCCAGACCACGCTCG
GGTGGTCGGGAAGGAAATCGTCCGGGGCGATCCAGTGCAGCATGGCGGGCTCCGTCGCGTCGCGGCCCTCCA
GGTAGCGTTCGCTGGCGCAGAGCACGTAGCGCACCTCGCCGAGGTTGCGCCCGACCAGGTGTTCCGGCGGCG
TGCGGGTCATGCGCAGGGCGATGTCGGCGTCGCGCCGGCTGA
Translation:
MRGLPHRQGRQAVRRGPADGNADRRGVLDQHHPGPQDRHRRLQLRGLRPCRAPRRGQIRRHPLPGDALPVLR
ASQRSGHARPLRLLHAWRGAGGAAQQGQRHPLAAVDALAAGILALDLRSRGEGLPGRRRAGPGAGARRLPGR
RPWPLWRLPYPAWAGHAGEGPGGERWRGLPVRQRAAGELDRQEPARRPPDRTGQLERSRPGQLPAHRPQRAQ
RGVRRHVRRGGAQHAVHDRRRPHRHRPLPQVAAAGGPLRPAARLRRERGPGTVPRRRQQDRRGALRRQLRGL
PPHRRQGLCAGLPGPGRQPGGDRQRPDLPGAHRAQGRHPAGHPPGTVELHHAAVRLADERPGDRRRGQLHPH
QLGQPGAERQRRRGQAPAQGHRRGGGGRHSAAGTGRGGSRLSARPLAKRHSSPSPARGRGLGSGSAPYRARP
SSFTHHPSAHAAPARRTTRPPSATPGSPDGSAATGRWRSPRGRRPVPAGRRRRAAGRRGSPPGRGRRGPSRR
PPARRCSGRPAIPRDSVDDARPRSGGREGNRPGRSSAAWRAPSRRGPPGSVRWRRARSAPRRGCARPGVPAA
CGSCAGRCRRRAG*
AnnotationID:5958GeneID:5957
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 07:07:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:15802
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29034
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48959How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1816781Stop: 1818550
Length: 1770
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCGTGGCCTGCCACACCGCCAGGGACGGCAAGCCGTTCGCCGGGGGCCTGCCGATGGAAACGCCGATCGG
CGCGGTGTACTCGACCAACATCACCCCGGACCGCAAGACCGGCATCGGCGACTACAGCTTCGAGGACTTCGA
CCGTGCCGTGCGCCACGGCGTGGCCAGATCCGGCGACACCCTCTACCCGGCGATGCCCTACCCGTCCTACGC
GCGAGTCAGCGAAGCGGACATGCGCGCCCTCTACGCCTACTTCATGCATGGCGTGGAGCCGGTGGAGCAGCC
CAACAAGGCCAGCGACATCCCCTGGCCGCTGTCGATGCGCTGGCCGCTGGCATTCTGGCGCTGGACCTTCGC
TCCCGAGGTGAAGGACTTCCAGGCCGCCGCCGGGCAGGACCCGGTGCTGGCGCGCGGCGCCTACCTGGTCGA
AGGCCTTGGCCACTGTGGCGCCTGCCATACCCCGCGTGGGCTGGGCATGCAGGAGAAGGCCCTGGCGGCGAG
CGATGGCGCGGCCTACCTGTCCGGCAGCGCGCCGCTGGAGAACTGGATCGCCAAGAGCCTGCGCGGCGACCA
CCGGACCGGACTGGGCAGTTGGAGCGAAGCCGACCTGGTCAGCTTCCTGCGCACCGGCCGCAGCGAGCGCAG
CGCGGTGTTCGGCGGCATGTCCGACGTGGTGGTGCACAGCATGCAGTACATGACCGACGCCGACCTCACCGC
CATCGCCCGCTACCTCAAGTCGCTGCCGCCGGCGGACCCCTCCGACCAGCCGCACGTCTACGACGAGAGCGT
GGCCCAGGCACTGTTCCACGGCGACGACAGCAAGACCGGCGCGGCGCTCTACGTCGACAACTGCGGGGCCTG
CCACCGCACCGACGGCAAGGGCTATGCGCGGGTCTTCCCGGCCCTGGCCGGCAACCCGGTGGTGACCGGCAG
CGACCCGACCTCCCTGGTGCACATCGTGCTCAAGGGCGGCACCCTGCCGGCCACCCACCAGGCACCGTCGAG
CTTCACCATGCCGCCGTTCGGCTGGCGGATGAACGACCAGGAGATCGCCGACGTGGTCAACTTCATCCGCAC
CAGTTGGGGCAACCAGGCGCCGAGCGTCAGCGTCGACGAGGTCAAGCGCCTGCGCAAGGACACCGGCGCGGC
GGCGGTGGGCGACATTCCGCCGCCGGGACCGGCCGCGGCGGATCGCGGCTGAGCGCCAGGCCTCTGGCGAAA
CGCCATTCCAGCCCCTCTCCCGCTCGCGGGAGAGGGTTGGGGAGCGGGAGCGCGCCGTACCGGGCACGGCCC
TCCTCCTTCACTCATCACCCAAGCGCACATGCCGCCCCAGCTCGTCGAACAACGCGACCACCGAGCGCAACG
CCCGGCAGTCCGGACGGGTCAGCAGCCACAGGGCGCTGGCGCAGCCCTCGAGGTCGGCGTCCAGTACCCGCA
GGCCGTCGCCGTCGCGCAGCAGGTAGGCGGGGATCGCCGCCAGGCCGAGGCCGGCGCGGGCCATCTCGGAGA
CCGCCAGCACGCCGTTGCAGCGGTAGGCCGGCAATACCCCGGGATAGTGTCGACGACGCCAGACCACGCTCG
GGTGGTCGGGAAGGAAATCGTCCGGGGCGATCCAGTGCAGCATGGCGGGCTCCGTCGCGTCGCGGCCCTCCA
GGTAGCGTTCGCTGGCGCAGAGCACGTAGCGCACCTCGCCGAGGTTGCGCCCGACCAGGTGTTCCGGCGGCG
TGCGGGTCATGCGCAGGGCGATGTCGGCGTCGCGCCGGCTGA