ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5956

TrivialName: PA14_35280

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_35280

PAO1 Ortholog Locus:

Sequence Length: 2124

Protein Length: 707

Start: 3137254

Stop: 3139377

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK22724.1| (AE005749) hypothetical protein [Caulobacter crescentus CB15] Identities = 159/609 (26%), Positives = 211/609 (34%), Gaps = 132/609 (21%)

Sequence:

TTGCGCTCCTCATGCCTGCACCAGCGGACCGGGGTTCTTCAGGTATTGCTCGCGGATCGCCTTGGCCGACCA
GTAGGCCAGCGCCGCCACCAGCCCAGTGGGGTTGTAGCCGGTGCCCTGGGGGAAGGCCGAGGCGCCCATGAC
GAAGACATTGTGCACGTCCCAGCTCTGCAGGTAGCGGTTGAGCACGCTGGTCTTCGGATCGCTGCCCATGAT
CGCCCCGCCGAGCAGGTGGGTGGTCTGGTAGACCCGTGTATTGAAGTGGTCGCCGAAGTTCTTGACGCTCAC
CGAGATGGCCTTCGGGTTCATCGCCTCGGCGATCTTGCGCATGTGCTCGGTGACGTAGCGGCTCATGCGGAT
CTCGTTGTCCTTCCAGTCGAAGGTCATGCGCAGCAGTGGCTGGCCGTAGGCGTCCTTGTAGGTCGGGTCGAG
GTCGAGGTAGTTGTCGCGGTAGGTCATGTTGCTGCCGTGGGCGTCCATCGACACGGTGTGCGTGTAGGCGTC
CTTGACCGCCTGTTTCCAGCCGCTGCCCCAGCTCGGCGTGCCGGGCGGCACGGCGAGGCCGCCGATCGGCTT
GGAGCCGGCCTGGTTGACCCACATCGGCGAGCCGCCGACGAAGCCCAGCGGTCCGTGGTCGAAGTTGTCGGC
GTTGAAGTCGTCCACCGCCACGCCGCCGCCGCCGGTGCCGACGAAGGGGTTGGTATGCACGTCCTTGTCGAA
GAACGCCTTGATGGTGGCCATGTTCTGGTAGGCGAAGTTCTTCCCCACCACGCCCTCGCCGGTGCGCGGGTC
ATAGGGCTTGCCGATGCCGGAGAGCAGCAGCAGGCGCACGTTGTGGAACTGGAAGGCACTGATGATCACCAG
CTTCGCCGGCTGCACGATCTCGCGCCCCTGGGCGTCGACGTAGGTCACGCCGGTGGCCTGCCTGCCGTCGCT
GTCGAGGTTGACCTTGAGCACGTTGCAGTTGGCGCGCAGTTCGAACAGCGGGGTCTGGCGCAGCGCCGGCAG
GATGTTCAGGTTCGGCGAGGCCTTGGAATACATGTAGCAAGCGTAGCCGCTGCAGAAGCCGCAGAAGTTGCA
CGGCCCCATCTGCACCCCGTAGGGGTTGGTCCAGGGCCCCGAAGCGTTGGCCGCCGGCAGGTCGTAGGGGTG
CAGGCCGAGTTCCTCGGCGGCCTTGCGGAACAGTTGCGCGGAGTACACCTGGCGCAGCGCCGGCAGCGGGAA
GTCGTCCGAGCGGTCGGCGGCGAACGGATTGCCCTTGCCGACCACCTGGCCCTTGACCGTATGCGCGGTGCC
GGAGGTGCCGAAGACCTTCTCGGCGAAATCGAAGTGCGGCTCCAGCTCTTCGTAGCTGACCCCGTAGTCCTG
GATGGTCATGCCTTCGGGGATGAATTTCTTGCCGTAGCGTTCCTCGTAGTGACTGCGCAGGCGCAGTTCCTC
GGGCATGATCCGGAAATGCACGCCGGACCAGTGCAGGCCGGCGCCACCGACGCCGTCGCCGGGAAGGAAGGC
GGAGAGCTGACGGTAGGGCAGCGCGGTGTCGTTGATCCCGTGGCGGATGCTCACGGTGCTCTTGGAGAGATT
CTGGAACAGCTTGCCGCGTGTGTTGTAGGTCAGCTCGTCGAGGGTGTTCGGGTAGGCGCCGTCGGGATAGGT
ATCGCGGTTCTCGCCGCGCTCCAGCGCCACCACGTTGAGCCCGGCCTCGGTCAGCTCCTTGGCCAGGATCGC
TCCGGTCCAGCCGAAGCCGACCACCACCGCGTCCACCGGTTTGAGTGTCGTCGCCATGTTCAGCCCCTCTCG
CCGGAAATCGCCACCGGCGGGAAGGGATACTTCTCGCCACGGTCGGCCCAGTCCATGAAGTCGGCGCGGGCA
CCGGGGAAACCGACCAGCTTCCAGCCCACCAGGCCGCGATTGCCACCGTGCTGCGGATCGGAGAAGAAGCCT
TCGCGGGTGTTCTGCAGCAACTGGCCGAAGAGCAGCTTGGCCGGCAGGTCCTGCAGGTCGATCTGGCCGGCT
TCCAGGCGTTGCAGGATGTCGTCCTGCGCTGACGGCTCCAGCTCGGCGAACGGCTTGCCCTGGTTGGCCTTG
CTCCAGCGTTCCAGGGCGGCGATGCCGACCCGGTAG

Translation:

MRSSCLHQRTGVLQVLLADRLGRPVGQRRHQPSGVVAGALGEGRGAHDEDIVHVPALQVAVEHAGLRIAAHD
RPAEQVGGLVDPCIEVVAEVLDAHRDGLRVHRLGDLAHVLGDVAAHADLVVLPVEGHAQQWLAVGVLVGRVE
VEVVVAVGHVAAVGVHRHGVRVGVLDRLFPAAAPARRAGRHGEAADRLGAGLVDPHRRAADEAQRSVVEVVG
VEVVHRHAAAAGADEGVGMHVLVEERLDGGHVLVGEVLPHHALAGARVIGLADAGEQQQAHVVELEGTDDHQ
LRRLHDLAPLGVDVGHAGGLPAVAVEVDLEHVAVGAQFEQRGLAQRRQDVQVRRGLGIHVASVAAAEAAEVA
RPHLHPVGVGPGPRSVGRRQVVGVQAEFLGGLAEQLRGVHLAQRRQREVVRAVGGERIALADHLALDRMRGA
GGAEDLLGEIEVRLQLFVADPVVLDGHAFGDEFLAVAFLVVTAQAQFLGHDPEMHAGPVQAGATDAVAGKEG
GELTVGQRGVVDPVADAHGALGEILEQLAACVVGQLVEGVRVGAVGIGIAVLAALQRHHVEPGLGQLLGQDR
SGPAEADHHRVHRFECRRHVQPLSPEIATGGKGYFSPRSAQSMKSARAPGKPTSFQPTRPRLPPCCGSEKKP
SRVFCSNWPKSSLAGRSCRSIWPASRRCRMSSCADGSSSANGLPWLALLQRSRAAMPTR*

AnnotationID:5957 GeneID:5956

AnnotatorUID: diggins

Modification Date/Time: 2004-06-10 14:02:32

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:15800

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29032

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32513

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 5956_cdd.html

URL:

GC ORFID: `48958`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `1816662`	Stop: `1814539`
Length: `2124`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCGCTCCTCATGCCTGCACCAGCGGACCGGGGTTCTTCAGGTATTGCTCGCGGATCGCCTTGGCCGACCA GTAGGCCAGCGCCGCCACCAGCCCAGTGGGGTTGTAGCCGGTGCCCTGGGGGAAGGCCGAGGCGCCCATGAC GAAGACATTGTGCACGTCCCAGCTCTGCAGGTAGCGGTTGAGCACGCTGGTCTTCGGATCGCTGCCCATGAT CGCCCCGCCGAGCAGGTGGGTGGTCTGGTAGACCCGTGTATTGAAGTGGTCGCCGAAGTTCTTGACGCTCAC CGAGATGGCCTTCGGGTTCATCGCCTCGGCGATCTTGCGCATGTGCTCGGTGACGTAGCGGCTCATGCGGAT CTCGTTGTCCTTCCAGTCGAAGGTCATGCGCAGCAGTGGCTGGCCGTAGGCGTCCTTGTAGGTCGGGTCGAG GTCGAGGTAGTTGTCGCGGTAGGTCATGTTGCTGCCGTGGGCGTCCATCGACACGGTGTGCGTGTAGGCGTC CTTGACCGCCTGTTTCCAGCCGCTGCCCCAGCTCGGCGTGCCGGGCGGCACGGCGAGGCCGCCGATCGGCTT GGAGCCGGCCTGGTTGACCCACATCGGCGAGCCGCCGACGAAGCCCAGCGGTCCGTGGTCGAAGTTGTCGGC GTTGAAGTCGTCCACCGCCACGCCGCCGCCGCCGGTGCCGACGAAGGGGTTGGTATGCACGTCCTTGTCGAA GAACGCCTTGATGGTGGCCATGTTCTGGTAGGCGAAGTTCTTCCCCACCACGCCCTCGCCGGTGCGCGGGTC ATAGGGCTTGCCGATGCCGGAGAGCAGCAGCAGGCGCACGTTGTGGAACTGGAAGGCACTGATGATCACCAG CTTCGCCGGCTGCACGATCTCGCGCCCCTGGGCGTCGACGTAGGTCACGCCGGTGGCCTGCCTGCCGTCGCT GTCGAGGTTGACCTTGAGCACGTTGCAGTTGGCGCGCAGTTCGAACAGCGGGGTCTGGCGCAGCGCCGGCAG GATGTTCAGGTTCGGCGAGGCCTTGGAATACATGTAGCAAGCGTAGCCGCTGCAGAAGCCGCAGAAGTTGCA CGGCCCCATCTGCACCCCGTAGGGGTTGGTCCAGGGCCCCGAAGCGTTGGCCGCCGGCAGGTCGTAGGGGTG CAGGCCGAGTTCCTCGGCGGCCTTGCGGAACAGTTGCGCGGAGTACACCTGGCGCAGCGCCGGCAGCGGGAA GTCGTCCGAGCGGTCGGCGGCGAACGGATTGCCCTTGCCGACCACCTGGCCCTTGACCGTATGCGCGGTGCC GGAGGTGCCGAAGACCTTCTCGGCGAAATCGAAGTGCGGCTCCAGCTCTTCGTAGCTGACCCCGTAGTCCTG GATGGTCATGCCTTCGGGGATGAATTTCTTGCCGTAGCGTTCCTCGTAGTGACTGCGCAGGCGCAGTTCCTC GGGCATGATCCGGAAATGCACGCCGGACCAGTGCAGGCCGGCGCCACCGACGCCGTCGCCGGGAAGGAAGGC GGAGAGCTGACGGTAGGGCAGCGCGGTGTCGTTGATCCCGTGGCGGATGCTCACGGTGCTCTTGGAGAGATT CTGGAACAGCTTGCCGCGTGTGTTGTAGGTCAGCTCGTCGAGGGTGTTCGGGTAGGCGCCGTCGGGATAGGT ATCGCGGTTCTCGCCGCGCTCCAGCGCCACCACGTTGAGCCCGGCCTCGGTCAGCTCCTTGGCCAGGATCGC TCCGGTCCAGCCGAAGCCGACCACCACCGCGTCCACCGGTTTGAGTGTCGTCGCCATGTTCAGCCCCTCTCG CCGGAAATCGCCACCGGCGGGAAGGGATACTTCTCGCCACGGTCGGCCCAGTCCATGAAGTCGGCGCGGGCA CCGGGGAAACCGACCAGCTTCCAGCCCACCAGGCCGCGATTGCCACCGTGCTGCGGATCGGAGAAGAAGCCT TCGCGGGTGTTCTGCAGCAACTGGCCGAAGAGCAGCTTGGCCGGCAGGTCCTGCAGGTCGATCTGGCCGGCT TCCAGGCGTTGCAGGATGTCGTCCTGCGCTGACGGCTCCAGCTCGGCGAACGGCTTGCCCTGGTTGGCCTTG CTCCAGCGTTCCAGGGCGGCGATGCCGACCCGGTAG