ViewGene
Locus Name:
GeneID:
Location:

GeneID:5949
TrivialName: PA14_35560
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35560
PAO1 Ortholog Locus:
Sequence Length:294
Protein Length:97
Start: 3160471
Stop: 3160764
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM84276.1|AE013671_3 (AE013671) protein chain initiation factor IF-2 [Yersinia pestis KIM]
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Sequence:
ATGAAAGCCAGCAAACCCGGCCCCAAGCCGAGCGGCAAGGCCAAGTCGGCCGCCCAGCGGATGCGCGAGTAC
CGCGCGCGCAAGGCCGAGGAGGCCCTCGGCGCCGAGCATTCCGACAAGGAGCGCGAGCGGCAGATCCGCCGC
GAGGCGCGCGCCGAACTGGAACGCGTGAAGCTGGAGCAGCAGCGCCGCGAACACACCCTGCGCAAGGAACTG
GAAGCCTGCCAGACCGAGATTGGCCGCCTGCTCGGCCTGCTGCGCCGGCACGGCATCGATCCGCACCCGGGC
AACTGA
Translation:
MKASKPGPKPSGKAKSAAQRMREYRARKAEEALGAEHSDKERERQIRREARAELERVKLEQQRREHTLRKEL
EACQTEIGRLLGLLRRHGIDPHPGN*
AnnotationID:5950GeneID:5949
AnnotatorUID: diggins
Modification Date/Time: 2004-06-10 22:10:48
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:11801




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29018




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32524




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5949_cdd.html


    		




 
URL:









      

          
GC ORFID: 48951How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1793445Stop: 1793152

          
Length: 294


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAAGCCAGCAAACCCGGCCCCAAGCCGAGCGGCAAGGCCAAGTCGGCCGCCCAGCGGATGCGCGAGTAC 
CGCGCGCGCAAGGCCGAGGAGGCCCTCGGCGCCGAGCATTCCGACAAGGAGCGCGAGCGGCAGATCCGCCGC 
GAGGCGCGCGCCGAACTGGAACGCGTGAAGCTGGAGCAGCAGCGCCGCGAACACACCCTGCGCAAGGAACTG 
GAAGCCTGCCAGACCGAGATTGGCCGCCTGCTCGGCCTGCTGCGCCGGCACGGCATCGATCCGCACCCGGGC 
AACTGA