ViewGene
Locus Name:
GeneID:
Location:

GeneID:5943
TrivialName: PA14_35800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35800
PAO1 Ortholog Locus:
Sequence Length:1317
Protein Length:438
Start: 3186315
Stop: 3184999
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC41567.1| (AB088420) hypothetical protein [Pseudomonas resinovorans]
Identities = 326/410 (79%), Positives = 366/410 (89%), Gaps = 1/410 (0%)
Sequence:
ATGGCCAAGGATGACGAGAAGTACCGCTGGGACTGGGCAACCCAAACCTTTCCCACCATCGATCCACACAGC
AAGATCAAGCACCAGATCATCGACGACTACATCCAGGCCTACATCGATGTCCTGATGCGGAATCAGCAAATG
CCACTGCTTGGCCTATCAATTGTCGATGGCTTCAGCGGTGGAGGTATATATAACGACAGCGCAGGCGGTCAC
CACTTCGGCTCCCCGGTGATCGCCCTGGAAGCAATCCAGGAGTCGGAAGTGCGCAACAACGTGGGGCGCATC
AAGCATCGACCGATCTGCTCGCAGCATCACTTTGTGGATGTGAAGCCGAAGAATACTGCTTGCTTGCACGCC
GTCCTGGCCAGCCGCGGACATCAGGCCCGCATTGGACAGGACATTCACCTGCATACCGCCGAGTTCACCAAA
GCTCTTCCGGCCATTGCGCAAAGCCTCAAGGCCTTTGGAAAAAGCGAGCGCGTTCTGTTTCTGCTCGATCAG
TACGGCTACGGCGACGTGCCATTCGGCCAGATCAAATGGATCTTCCAGCACCTCAGCAATGCTGAGGTCCTG
CTGACCTTCAATGTCGACTTTCTAATCACGTACTTAGCGGACCGCCACGCCAACCGCAAGGCTATTGCCAGT
ATCGGTCTAGAACAGTATGTCCCCTGGGAACAGCTACGGCACTTAAAAGCACATAGCTCCCAGGATTGGCAG
TACCTGATCCAGCGCTATCTGTCGGACGGGATCAAGCAGGAAAGCGGCGCGCAGTTCATGACGGTGTTCTTC
ATTCGCCCACACGGCACCAACCCCATGGCCTACTGGTTCATCCACCTGGCGAACAGCTACCGCGCCAACGAC
GTGATGAAAGCCATACACTGGAAGTACGGCAACAATTTCTCCCACCTGTTATCACCGTCCTGCTTCTTTGGT
TACGACGCTAACCGGGATGTGGGGGTGACCGGCCAGCCGGACCTACTCTGCGAAGGAGAACACCAGTTCGAC
CAAGTGACTGATACCCGGATTCGTGGGGAACTGTCCGAGCTGCTACCCAAACAGGTATTCGAAGTCGAGCGT
CGTCCCTTCATCCAGCTCATGACGGAGCTCACCAACTTCACCATGGCAGACGAAAGTCGCGTGAAGCTGGCC
CTGGATGTCGCGGTGGCCAACGGCGATATCCAGGCAGTGGACAAGGAAGGCAAGAGCAGGCGGCGCAAAGGC
ACGAGCATCAAGTCCACCGATATCCTGATCGCGCCGCCGCAGAAGACGTTTTTCTTCTTTCCCCAACAGAAG
AAGACGTCCAGGGACACATGA
Translation:
MAKDDEKYRWDWATQTFPTIDPHSKIKHQIIDDYIQAYIDVLMRNQQMPLLGLSIVDGFSGGGIYNDSAGGH
HFGSPVIALEAIQESEVRNNVGRIKHRPICSQHHFVDVKPKNTACLHAVLASRGHQARIGQDIHLHTAEFTK
ALPAIAQSLKAFGKSERVLFLLDQYGYGDVPFGQIKWIFQHLSNAEVLLTFNVDFLITYLADRHANRKAIAS
IGLEQYVPWEQLRHLKAHSSQDWQYLIQRYLSDGIKQESGAQFMTVFFIRPHGTNPMAYWFIHLANSYRAND
VMKAIHWKYGNNFSHLLSPSCFFGYDANRDVGVTGQPDLLCEGEHQFDQVTDTRIRGELSELLPKQVFEVER
RPFIQLMTELTNFTMADESRVKLALDVAVANGDIQAVDKEGKSRRRKGTSIKSTDILIAPPQKTFFFFPQQK
KTSRDT*
AnnotationID:5944GeneID:5943
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 16:04:52
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|33114139|gb|AAP94696.1|  conserved hypothetical protein [Pseudomonas aeruginosa]
     Length=438
     Score =  896 bits (2315),  Expect = 0.0
     Identities = 437/438 (99%), Positives = 438/438 (100%), Gaps = 0/438 (0%)

gi|26106127|dbj|BAC41567.1|  hypothetical protein [Pseudomonas resinovorans]
     Length=415
     Score =  680 bits (1754),  Expect = 0.0
     Identities = 326/410 (79%), Positives = 366/410 (89%), Gaps = 1/410 (0%)

gi|28850525|gb|AAO53605.1|  conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
     Length=443
     Score =  468 bits (1205),  Expect = 1e-130
     Identities = 231/430 (53%), Positives = 310/430 (72%), Gaps = 2/430 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:11789




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29006




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5943
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197981
                           gb|AAP94696.1|
                           (AY258138) conserved hypothetical protein [Pseudomonas aeruginosa]
                           438
                           99.77
                           99.99
                           0
                           2315.0
     

     
     
197982
                           dbj|BAC41567.1|
                           (AB088420) hypothetical protein [Pseudomonas resinovorans]
                           438
                           74.88
                           84.01
                           23
                           1756.0
     

     
     
197983
                           gb|AAO53605.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           444
                           52.47
                           70.49
                           7
                           1209.0
     

     






      

          
GC ORFID: 48945How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1767601Stop: 1768917

          
Length: 1317


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCCAAGGATGACGAGAAGTACCGCTGGGACTGGGCAACCCAAACCTTTCCCACCATCGATCCACACAGC 
AAGATCAAGCACCAGATCATCGACGACTACATCCAGGCCTACATCGATGTCCTGATGCGGAATCAGCAAATG 
CCACTGCTTGGCCTATCAATTGTCGATGGCTTCAGCGGTGGAGGTATATATAACGACAGCGCAGGCGGTCAC 
CACTTCGGCTCCCCGGTGATCGCCCTGGAAGCAATCCAGGAGTCGGAAGTGCGCAACAACGTGGGGCGCATC 
AAGCATCGACCGATCTGCTCGCAGCATCACTTTGTGGATGTGAAGCCGAAGAATACTGCTTGCTTGCACGCC 
GTCCTGGCCAGCCGCGGACATCAGGCCCGCATTGGACAGGACATTCACCTGCATACCGCCGAGTTCACCAAA 
GCTCTTCCGGCCATTGCGCAAAGCCTCAAGGCCTTTGGAAAAAGCGAGCGCGTTCTGTTTCTGCTCGATCAG 
TACGGCTACGGCGACGTGCCATTCGGCCAGATCAAATGGATCTTCCAGCACCTCAGCAATGCTGAGGTCCTG 
CTGACCTTCAATGTCGACTTTCTAATCACGTACTTAGCGGACCGCCACGCCAACCGCAAGGCTATTGCCAGT 
ATCGGTCTAGAACAGTATGTCCCCTGGGAACAGCTACGGCACTTAAAAGCACATAGCTCCCAGGATTGGCAG 
TACCTGATCCAGCGCTATCTGTCGGACGGGATCAAGCAGGAAAGCGGCGCGCAGTTCATGACGGTGTTCTTC 
ATTCGCCCACACGGCACCAACCCCATGGCCTACTGGTTCATCCACCTGGCGAACAGCTACCGCGCCAACGAC 
GTGATGAAAGCCATACACTGGAAGTACGGCAACAATTTCTCCCACCTGTTATCACCGTCCTGCTTCTTTGGT 
TACGACGCTAACCGGGATGTGGGGGTGACCGGCCAGCCGGACCTACTCTGCGAAGGAGAACACCAGTTCGAC 
CAAGTGACTGATACCCGGATTCGTGGGGAACTGTCCGAGCTGCTACCCAAACAGGTATTCGAAGTCGAGCGT 
CGTCCCTTCATCCAGCTCATGACGGAGCTCACCAACTTCACCATGGCAGACGAAAGTCGCGTGAAGCTGGCC 
CTGGATGTCGCGGTGGCCAACGGCGATATCCAGGCAGTGGACAAGGAAGGCAAGAGCAGGCGGCGCAAAGGC 
ACGAGCATCAAGTCCACCGATATCCTGATCGCGCCGCCGCAGAAGACGTTTTTCTTCTTTCCCCAACAGAAG 
AAGACGTCCAGGGACACATGA