ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5929

TrivialName: PA14_36040

AnnotatorUID: ericdeziel

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_36040

PAO1 Ortholog Locus:

Sequence Length: 1557

Protein Length: 518

Start: 3209659

Stop: 3211215

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: dbj|BAA96489.1| (AB039333) chemotactic transducer CtpL [Pseudomonas aeruginosa] Identities = 77/264 (29%), Positives = 95/264 (35%), Gaps = 48/264 (18%). MADE INACTIVE SINCE OVERLAPPING GENE HAS A STRONGER HOMOLOGY TO A PAO1 PREDICTED GENE.

Sequence:

GTGGCGCGCCTCCTGTCTCATGCCGATGCAAGTGGCGGTATCGGACGAGAATCCCTCGACACCGAGAAGCGG
CTTTTCCGCGTCCAGGCATGGGACGATAGGAGCGCTCGGGTAGCCCTGGATCGATACTCGCTTTGCTCATTC
GGGGTACAGGCAGGAACACCGGCGGGCCTCTTCCGGGGCTCCTCCAGTGTCCTGCTGCACACCTCTGAGGCT
TCGATATCCTCCGAACCTCGTCTTTGCCCGGTTCCTCTTTCAGTCAATCGCCGCCCGCGTCTCAACCCCGTC
CACCAACCGCGCAATCCCCAATGGGTTGCCATCCTTCAGCGCTTCCGGCAGCCACGCGTCCGGGTAGTTCTG
GTAGCACACCGGGCGCAGGAAACGCTCGATGGCCAGGGTGCCCACCGAGGTGCCTCGGGCGTCCGAGGTGGC
CGGGTACGGACCGCCGTGGACCATCGCGTCGCAGACTTCCACGCCGGTCGGATAGCCGTTGAGCAGCAGGCG
CCCTGCCTTCTGTTCCAGGAGCGGTACCAGGTCGGCGAAGGACGCCAGGTCTTCCGCTTCGGCGATCAGGGT
CGCGGTGAGCTGCCCGTGCAGCCCATGCAGCGCGCGCTTCAGTTCGGCGTGGTCGGCGACCTCGACGACCAC
GCTGGCCGGGCCGAAGACTTCTTCCTGCAGCAACTCGTCGCCCTCCAGCAGCAGGCTGACGTCCGCCTGGAA
CAGTTGCGGCCGGGCCTGGCGGCCCTCCTGCGGTTGCCCGGCGAGATGGCGGACGCGCGGGTGGGCGTGCAG
CGCCGCCAGGCCTTTTTCATAGCTGGCCAGCGTGCCGGCGTTGAGCATGGTCTGCGCCGGCTGGTCGTCCAT
GCGGGcggcgaagCGTTCgaGGaacgccgagAATTGCGCAGAGCGGATGCCGATGACCAGCCcgggAtTGGT
ACAGAACTGGCCGCAGCCGAGCACCACCGAGGCACTCAGTTCGTCGGCCACGGCCTCGCCTCGGCCTTGCAG
CGCGGCGGGCAGCAGGACCACCGGGTTGATGCTGCTCATCTCGGCGAACACCGGGATCGGCTGCGCCCGGGC
GGCCGCCATGTCGCAAAGGGCGCGGCCGCCCTTCAGCGAACCGGTGAAGCCGACCGCCTGGATCGCGGGGTG
GCGGACCAGCCGCTCCCCTACTCCACCGCCGTAGATCATGTTGAACACGCCCGCCGGCATGCCGGTGCGCTC
GGCCGCGCGGAGGATCGCTGCGGCGACCCGTTCGGCGGTGGCCATGTGTCCGCTGTGCGCCTTGAACACCAC
CGGGCAGCCGGCGGCCAGGGCCGCGGCGGTATCGCCGCCGGCGGTGGAGAACGCCAGGGGGAAGTTGCTCGC
GCCGAACACCGCCACCGGGCCGAGGCCGATCCGGCACTGGCGCAGGTCGACGCGTGGCAGCGGCTTGCGTTC
GGGCCGGGCGCGGTCGATGCGCGCGCCATGGAAGTCGCCGCGCCGCAGGACTTCGGCGAACAGGCGCAGCTG
GCCGCTGGTGCGGCTGCGTTCGCCCTGGATGCGCGTGGCCGGTAG

Translation:

MARLLSHADASGGIGRESLDTEKRLFRVQAWDDRSARVALDRYSLCSFGVQAGTPAGLFRGSSSVLLHTSEA
SISSEPRLCPVPLSVNRRPRLNPVHQPRNPQWVAILQRFRQPRVRVVLVAHRAQETLDGQGAHRGASGVRGG
RVRTAVDHRVADFHAGRIAVEQQAPCLLFQERYQVGEGRQVFRFGDQGRGELPVQPMQRALQFGVVGDLDDH
AGRAEDFFLQQLVALQQQADVRLEQLRPGLAALLRLPGEMADARVGVQRRQAFFIAGQRAGVEHGLRRLVVH
AGGEAFEERRELRRADADDQPGIGTELAAAEHHRGTQFVGHGLASALQRGGQQDHRVDAAHLGEHRDRLRPG
GRHVAKGAAALQRTGEADRLDRGVADQPLPYSTAVDHVEHARRHAGALGRAEDRCGDPFGGGHVSAVRLEHH
RAAGGQGRGGIAAGGGERQGEVARAEHRHRAEADPALAQVDAWQRLAFGPGAVDARAMEVAAPQDFGEQAQL
AAGAAAFALDARGR*

AnnotationID:5930 GeneID:5929

AnnotatorUID: diggins

Modification Date/Time: 2005-03-04 04:04:21

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:15779

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28978