ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5927

TrivialName: PA14_36160

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_36160

PAO1 Ortholog Locus:

Sequence Length: 1704

Protein Length: 567

Start: 3223524

Stop: 3221821

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAB61632.1| (U32375) unknown [Rhizobium vitis] [Agrobacterium vitis] Identities = 77/246 (31%), Positives = 110/246 (44%), Gaps = 9/246 (3%)

Sequence:

ATGATGCTGGCGTCGGGAATCCGGGACATGGCGTATCTCGCTGGCGGCGGGGAGACCCAGGGTGACAAGAAA
TCCACCCCGCCGCCAGACGCAGGCTCAGGCGGCATGCCGGAGACTCCGCCGGCCACGCCGGAACAGCGCCCC
GGCGCAACGCGCCAGCAACGGCCAGAGCAGCATCGCCAGCGCCGCGCCGGTCAGGCTGGCCACCAGCGGGTT
GGACCAGAACACCGAGAGTTGCCCGTCGGAGAACAGCATCGACTGGCGGAACGCGTCCTCGGCCTTGTCGCC
GAGCACCGCGGCGAGCACCAGCGGGGCGATGGGGTAGCCGAGTTTCTTGAACAGGTAGCCGAGCGCGCCGAA
CAGCAGCATCAGGACCACGTCGAGCATGGCGTTGTGCACCGAGTAGGCCCCGATGGCGCAGACCATGACGAT
GATCGGCGCGACGATGGCGAACGGAATCCGCAGGATCGAGGCGAACAGCGGTACGGTCGCCAGTACCACGAT
CAGGCTGACCACGTTGCCCAGGTACATGCTGGCGATCAGGCCCCAGACGAAGTCGTGTTGTTCGACGAACAG
CGTCGGCCCGGGATGCAGCCCCCAGATCATCAGGCCACCGAGCATCACCGCGGCGGTCGCCGAGCCGGGGAT
GCCGAGCGTCAGCATCGGCAGCAGGGCGCTGGTGCCGGCGCTGTGGTCGGCAGTCTCCGGAGCGATCACGCC
TTCCACCTCGCCCTTGCCGAAGTTCTCGCGGTTCTTCGAGAAGCGCCGCGCCAGGCTGTAGCTCATGAACGA
GGCTGCGGTGGGGCCGCCCGGAGTGACGCCCATCCAGCAGCCGACCAGCGCGCTGCGCAGCCAGGTCAGCCA
GTAGCGCGGCAGCCTGGCCCAGGTACGCAGGATCACCATCGGCGTGATGCGTGCGCGCTCGCCGCGAAACAC
CAGGCCTTCCTCCACCGTGCAGAGGATCTCGCCGATGCCGAACAGGCCGATCACCGCCACCTCGAAACTCAG
CCCGGAAAGCAGCCAGGGCTGGTCGAAGGTCAGGCGCAGGTCGCCGGACACGGTATCCATGCCCACGGCGGC
CATGGCGAAGCCGATGGTCATCGCCACCAGGGTCTTCAATGGCGGGTTGCGGCTCATGCCGATGAAGGTGCA
GAACGCCAGCAGGTAGACGGCGAAGAACTCGGGCGAGCTGAACGCCAGGGCGAAGCGAGCGATATGGGTGGA
CAGGAAGGTCAGCAGCAGCACGCCGACCAGCGCCCCGAGGAGCGCCGAGGTGAAGGCGGCGGTCAGCGCTTC
GCCGGCCTGGCCGTTGCGCGCCATCGGGTAGCCGTCGAAGGTGGTGGCCACCGACGAGGGCTCGCCGGGGAT
GTTGAACAGGATCGAGGTGATCGAGCCACCGAACAACGCGCCCCAGTACATGCAGGAAAGCAGGATGATCGC
CGACACCGGCGACATGCTGAAGGTCAGCGGCAGCAGCAGCGCCACCCCGTTCGGCGCACCGAGGCCCGGCAG
CACGCCGACCAGGATGCCGAGCAGCACGCCGATCACCATCAGGCCGAGGTGATGGGCGCTGAGGACCAGGCT
CATGCCCTGCATCAGGGAATCGAATTCGCTCATGGCCTGGCGCTCCCGACGAAGGCCGCGAGGTCGGCCAGT
ATTCCGGCATCCAGCGGCACCTTGAACCAGACGGCGAAGACCAGGTAG

Translation:

MMLASGIRDMAYLAGGGETQGDKKSTPPPDAGSGGMPETPPATPEQRPGATRQQRPEQHRQRRAGQAGHQRV
GPEHRELPVGEQHRLAERVLGLVAEHRGEHQRGDGVAEFLEQVAERAEQQHQDHVEHGVVHRVGPDGADHDD
DRRDDGERNPQDRGEQRYGRQYHDQADHVAQVHAGDQAPDEVVLFDEQRRPGMQPPDHQATEHHRGGRRAGD
AERQHRQQGAGAGAVVGSLRSDHAFHLALAEVLAVLREAPRQAVAHERGCGGAARSDAHPAADQRAAQPGQP
VARQPGPGTQDHHRRDACALAAKHQAFLHRAEDLADAEQADHRHLETQPGKQPGLVEGQAQVAGHGIHAHGG
HGEADGHRHQGLQWRVAAHADEGAERQQVDGEELGRAERQGEASDMGGQEGQQQHADQRPEERRGEGGGQRF
AGLAVARHRVAVEGGGHRRGLAGDVEQDRGDRATEQRAPVHAGKQDDRRHRRHAEGQRQQQRHPVRRTEARQ
HADQDAEQHADHHQAEVMGAEDQAHALHQGIEFAHGLALPTKAARSASIPASSGTLNQTAKTR*

AnnotationID:5928 GeneID:5927

AnnotatorUID: diggins

Modification Date/Time: 2004-06-13 01:01:32

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:11759

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28974

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32538

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 5927_cdd.html

URL:

GC ORFID: `48929`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `1730392`	Stop: `1732095`
Length: `1704`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGATGCTGGCGTCGGGAATCCGGGACATGGCGTATCTCGCTGGCGGCGGGGAGACCCAGGGTGACAAGAAA TCCACCCCGCCGCCAGACGCAGGCTCAGGCGGCATGCCGGAGACTCCGCCGGCCACGCCGGAACAGCGCCCC GGCGCAACGCGCCAGCAACGGCCAGAGCAGCATCGCCAGCGCCGCGCCGGTCAGGCTGGCCACCAGCGGGTT GGACCAGAACACCGAGAGTTGCCCGTCGGAGAACAGCATCGACTGGCGGAACGCGTCCTCGGCCTTGTCGCC GAGCACCGCGGCGAGCACCAGCGGGGCGATGGGGTAGCCGAGTTTCTTGAACAGGTAGCCGAGCGCGCCGAA CAGCAGCATCAGGACCACGTCGAGCATGGCGTTGTGCACCGAGTAGGCCCCGATGGCGCAGACCATGACGAT GATCGGCGCGACGATGGCGAACGGAATCCGCAGGATCGAGGCGAACAGCGGTACGGTCGCCAGTACCACGAT CAGGCTGACCACGTTGCCCAGGTACATGCTGGCGATCAGGCCCCAGACGAAGTCGTGTTGTTCGACGAACAG CGTCGGCCCGGGATGCAGCCCCCAGATCATCAGGCCACCGAGCATCACCGCGGCGGTCGCCGAGCCGGGGAT GCCGAGCGTCAGCATCGGCAGCAGGGCGCTGGTGCCGGCGCTGTGGTCGGCAGTCTCCGGAGCGATCACGCC TTCCACCTCGCCCTTGCCGAAGTTCTCGCGGTTCTTCGAGAAGCGCCGCGCCAGGCTGTAGCTCATGAACGA GGCTGCGGTGGGGCCGCCCGGAGTGACGCCCATCCAGCAGCCGACCAGCGCGCTGCGCAGCCAGGTCAGCCA GTAGCGCGGCAGCCTGGCCCAGGTACGCAGGATCACCATCGGCGTGATGCGTGCGCGCTCGCCGCGAAACAC CAGGCCTTCCTCCACCGTGCAGAGGATCTCGCCGATGCCGAACAGGCCGATCACCGCCACCTCGAAACTCAG CCCGGAAAGCAGCCAGGGCTGGTCGAAGGTCAGGCGCAGGTCGCCGGACACGGTATCCATGCCCACGGCGGC CATGGCGAAGCCGATGGTCATCGCCACCAGGGTCTTCAATGGCGGGTTGCGGCTCATGCCGATGAAGGTGCA GAACGCCAGCAGGTAGACGGCGAAGAACTCGGGCGAGCTGAACGCCAGGGCGAAGCGAGCGATATGGGTGGA CAGGAAGGTCAGCAGCAGCACGCCGACCAGCGCCCCGAGGAGCGCCGAGGTGAAGGCGGCGGTCAGCGCTTC GCCGGCCTGGCCGTTGCGCGCCATCGGGTAGCCGTCGAAGGTGGTGGCCACCGACGAGGGCTCGCCGGGGAT GTTGAACAGGATCGAGGTGATCGAGCCACCGAACAACGCGCCCCAGTACATGCAGGAAAGCAGGATGATCGC CGACACCGGCGACATGCTGAAGGTCAGCGGCAGCAGCAGCGCCACCCCGTTCGGCGCACCGAGGCCCGGCAG CACGCCGACCAGGATGCCGAGCAGCACGCCGATCACCATCAGGCCGAGGTGATGGGCGCTGAGGACCAGGCT CATGCCCTGCATCAGGGAATCGAATTCGCTCATGGCCTGGCGCTCCCGACGAAGGCCGCGAGGTCGGCCAGT ATTCCGGCATCCAGCGGCACCTTGAACCAGACGGCGAAGACCAGGTAG