ViewGene
Locus Name:
GeneID:
Location:

GeneID:5926
TrivialName: PA14_36210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36210
PAO1 Ortholog Locus:
Sequence Length:756
Protein Length:251
Start: 3226921
Stop: 3226166
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO22886.1| (AY204467) GTPase regulator [Myxococcus xanthus]
Identities = 53/163 (32%), Positives = 68/163 (41%), Gaps = 18/163 (11%)
Sequence:
ATGACCGAGAAATCCATCTCAGGCACCTCCCTGGCGGTAGCGGCGGGTCTGCTGCAACGCCTGGCCGAAGGC
TTCGATCAGGGCGATGGCGCCGATGTAGAGGAGGGTGGCGATGCCGAAGGCCTGGAAGGTCTTGAAGGTCTC
GGTTTCCACCTGGCGCGAAGCGTAGGACAGCTCGGCCAGGCCGATGGCCATCGCCAGCGAGGAGTTCTTCAG
CGCATTCATGTACTGCCCGAGCAGCGGCGGCAGGGCCGTGCGCAGGGCCTGCGGCAGCACCACCACGCGCCA
TACCTGGCGCTGGGTCAGCCCCAGGGCGAGGCCGGCGGCGCGCTGCTCGGGGCGTACCGAGGCGATGCCGGC
GCGGAACTCCTCGGCGACGAAAGCCGAGGTATAGAGGGTCAGCCCCCAGGCACCGGCGAGGAACTCGAAGGA
CGGCCAGTCGAGCAAGGGCGTCTCGTGCGGCGTGTTCAGCCAGCTCACCAGCGCTTCCGGCAGCAGCGCGGG
AACGCCGAAGTACCAGAAGAACAGCTGCACCAGCAGCGGGGTATTGCGGAACAGCGCCAGGTAGGCGCGCGC
CGGCCAGGACAGCAGGCGTCGGCGCGACAGCCGGGCGATGGCCAGGGGGGCGCCGATCAGGGTGGCGAGCAG
GCAACTGAGCAGGGCAAGGCCGAGGGTCAGCAGGAAGCCGTCGAGCAACCAGCGCAGGTACTGCGGGGCGAG
AAGTTCGCCGAACATGTGCGGGATTCCGTCGGGTAG
Translation:
MTEKSISGTSLAVAAGLLQRLAEGFDQGDGADVEEGGDAEGLEGLEGLGFHLARSVGQLGQADGHRQRGVLQ
RIHVLPEQRRQGRAQGLRQHHHAPYLALGQPQGEAGGALLGAYRGDAGAELLGDESRGIEGQPPGTGEELEG
RPVEQGRLVRRVQPAHQRFRQQRGNAEVPEEQLHQQRGIAEQRQVGARRPGQQASARQPGDGQGGADQGGEQ
ATEQGKAEGQQEAVEQPAQVLRGEKFAEHVRDSVG*
AnnotationID:5927GeneID:5926
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 14:02:17
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:11757




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28972




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48928How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1726995Stop: 1727750

          
Length: 756


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGACCGAGAAATCCATCTCAGGCACCTCCCTGGCGGTAGCGGCGGGTCTGCTGCAACGCCTGGCCGAAGGC 
TTCGATCAGGGCGATGGCGCCGATGTAGAGGAGGGTGGCGATGCCGAAGGCCTGGAAGGTCTTGAAGGTCTC 
GGTTTCCACCTGGCGCGAAGCGTAGGACAGCTCGGCCAGGCCGATGGCCATCGCCAGCGAGGAGTTCTTCAG 
CGCATTCATGTACTGCCCGAGCAGCGGCGGCAGGGCCGTGCGCAGGGCCTGCGGCAGCACCACCACGCGCCA 
TACCTGGCGCTGGGTCAGCCCCAGGGCGAGGCCGGCGGCGCGCTGCTCGGGGCGTACCGAGGCGATGCCGGC 
GCGGAACTCCTCGGCGACGAAAGCCGAGGTATAGAGGGTCAGCCCCCAGGCACCGGCGAGGAACTCGAAGGA 
CGGCCAGTCGAGCAAGGGCGTCTCGTGCGGCGTGTTCAGCCAGCTCACCAGCGCTTCCGGCAGCAGCGCGGG 
AACGCCGAAGTACCAGAAGAACAGCTGCACCAGCAGCGGGGTATTGCGGAACAGCGCCAGGTAGGCGCGCGC 
CGGCCAGGACAGCAGGCGTCGGCGCGACAGCCGGGCGATGGCCAGGGGGGCGCCGATCAGGGTGGCGAGCAG 
GCAACTGAGCAGGGCAAGGCCGAGGGTCAGCAGGAAGCCGTCGAGCAACCAGCGCAGGTACTGCGGGGCGAG 
AAGTTCGCCGAACATGTGCGGGATTCCGTCGGGTAG