ViewGene
Locus Name:
GeneID:
Location:

GeneID:5925
TrivialName: PA14_36240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36240
PAO1 Ortholog Locus:
Sequence Length:1032
Protein Length:343
Start: 3228429
Stop: 3227398
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK62477.1| (AY034092) putative DNA-invertase [Micrococcus sp. 28]
Identities = 99/338 (29%), Positives = 116/338 (34%), Gaps = 77/338 (22%)
Sequence:
ATGGCGCAACCTGGCCCGCACCGACCGGGCGCCGCGAAGGAACATCGACCTCGCCGACTGGAAAGCCGACTG
GCGCGAACTGATCGCCGCGCTCGACAGGTTTTCCCGGAGCCACGGCTATCGCCAGCCGTTCACCGCGCAAGG
GCACGCAGCCCTGGAAAACGCCTGGGCCTGGGGCCAGGCCGCGGAAAACGCCAGTACGCTGCTGCTCAAGGC
CATCGACCGGGGCCTGGCCGGCGCCGAACTGCGTTCCATCTACCTGGAGACCGCCGCGCTGTGGCTGGACTA
CAGCCGGCTGCTCGGCGCCGCCCGCGACAGCCTGCGCGAGCAGGGCGAGGTCGACTTCGAGACGGCGCCGGC
CCTGGCGCCGCGCACCGGCCAGTACCCGTTCGCGCTGCAACTGCTCGCCATGGGCGTGCTGCTCGACGCCCA
GGAGCTAATCCCGGCGCTGGTCGAGGAGGTCCTGCAGTTCGATACCGACCGCCTGCTCGACTATCTCGGCGC
GGCCGCCCTCGGCCTGACTTCCGCCAGCGAGGAAACCTTCCATCCACGGCCGTTCGGGCAGTTGCGGGCGTT
CTTCGAAGAGGCGGACGGCAGCGACGCCCAGGCGCTGGCGCCTTACCTGCAAAGCCAGTACCGGGAGTTCTT
CCAGCTTTCCCCCAAGGCGCAGAAGAAGACCCGCCGCCTGACCGGCCCCTACGCCTGGGGCTGGTGGGCCAT
GGAGGTGTCGGCGCTGGGCGTGCTCTACGGCTGGGACGATGGCGTCCTGCGCGCCTCGCCGCATTACCTCGG
CGACCTGGTCGACTACGCGCGGGCGCGCGGCGACGCCTGAGCCACCGGCCGCCGCTCAGGCCCGCCGGCGGC
GGGCGAGGAAAGCGGCGGCCAGGTCGAGGCTGGTGCAGAGCAGGAAGTAGAGCAGGGCGACGAACAGGAAGA
TCTCCGTCGGGTGGACCATCACCCGGTTGCTCACCTGGGTGGCGACGAAGGACAGTTCGCCGACGCCGATCA
CGTAGGCCAGGGAAGTGTCCTTGA
Translation:
MAQPGPHRPGAAKEHRPRRLESRLARTDRRARQVFPEPRLSPAVHRARARSPGKRLGLGPGRGKRQYAAAQG
HRPGPGRRRTAFHLPGDRRAVAGLQPAARRRPRQPARAGRGRLRDGAGPGAAHRPVPVRAATARHGRAARRP
GANPGAGRGGPAVRYRPPARLSRRGRPRPDFRQRGNLPSTAVRAVAGVLRRGGRQRRPGAGALPAKPVPGVL
PAFPQGAEEDPPPDRPLRLGLVGHGGVGAGRALRLGRWRPARLAALPRRPGRLRAGARRRLSHRPPLRPAGG
GRGKRRPGRGWCRAGSRAGRRTGRSPSGGPSPGCSPGWRRRTVRRRRSRRPGKCP*
AnnotationID:5926GeneID:5925
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 13:01:25
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:11755




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28970




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48927How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1725487Stop: 1726518

          
Length: 1032


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCGCAACCTGGCCCGCACCGACCGGGCGCCGCGAAGGAACATCGACCTCGCCGACTGGAAAGCCGACTG 
GCGCGAACTGATCGCCGCGCTCGACAGGTTTTCCCGGAGCCACGGCTATCGCCAGCCGTTCACCGCGCAAGG 
GCACGCAGCCCTGGAAAACGCCTGGGCCTGGGGCCAGGCCGCGGAAAACGCCAGTACGCTGCTGCTCAAGGC 
CATCGACCGGGGCCTGGCCGGCGCCGAACTGCGTTCCATCTACCTGGAGACCGCCGCGCTGTGGCTGGACTA 
CAGCCGGCTGCTCGGCGCCGCCCGCGACAGCCTGCGCGAGCAGGGCGAGGTCGACTTCGAGACGGCGCCGGC 
CCTGGCGCCGCGCACCGGCCAGTACCCGTTCGCGCTGCAACTGCTCGCCATGGGCGTGCTGCTCGACGCCCA 
GGAGCTAATCCCGGCGCTGGTCGAGGAGGTCCTGCAGTTCGATACCGACCGCCTGCTCGACTATCTCGGCGC 
GGCCGCCCTCGGCCTGACTTCCGCCAGCGAGGAAACCTTCCATCCACGGCCGTTCGGGCAGTTGCGGGCGTT 
CTTCGAAGAGGCGGACGGCAGCGACGCCCAGGCGCTGGCGCCTTACCTGCAAAGCCAGTACCGGGAGTTCTT 
CCAGCTTTCCCCCAAGGCGCAGAAGAAGACCCGCCGCCTGACCGGCCCCTACGCCTGGGGCTGGTGGGCCAT 
GGAGGTGTCGGCGCTGGGCGTGCTCTACGGCTGGGACGATGGCGTCCTGCGCGCCTCGCCGCATTACCTCGG 
CGACCTGGTCGACTACGCGCGGGCGCGCGGCGACGCCTGAGCCACCGGCCGCCGCTCAGGCCCGCCGGCGGC 
GGGCGAGGAAAGCGGCGGCCAGGTCGAGGCTGGTGCAGAGCAGGAAGTAGAGCAGGGCGACGAACAGGAAGA 
TCTCCGTCGGGTGGACCATCACCCGGTTGCTCACCTGGGTGGCGACGAAGGACAGTTCGCCGACGCCGATCA 
CGTAGGCCAGGGAAGTGTCCTTGA