ViewGene
Locus Name:
GeneID:
Location:

GeneID:5924
TrivialName: PA14_36340
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36340
PAO1 Ortholog Locus:
Sequence Length:1344
Protein Length:447
Start: 3236645
Stop: 3237988
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
GID5924 (PA14_36340) replaced by GID7430 (PA14_36345). Homology: gb|AAG05579.1|AE004645_13 (AE004645) adenylate cyclase ExoY [Pseudomonas aeruginosa PAO1]
Identities = 369/373 (98%), Positives = 373/373 (100%)
Sequence:
GTGCGGAAAACAAAAAATTTGTCCGCGTTTTCTGATATCTCGCCGCTGCCCGGATTCTTATTCTCGACTCCT
TCTTTGGCATATGCGGGAAAACGAACCATGCGTATCGACGGTCATCGTCAGGTGGTTTCTAACGCAACGGCA
CAGCCCGGACCGCTACTGCGCCCTGCGGATATGCAGGCACGGGCTCTACAGGACCTGTTCGATGCGCAGGGG
GTGGGGGTTCCCGTCGAACATGCCTTGCGCATGCAGGCGGTGGCCAGGCAGACGAATACCGTCTTTGGCATT
CGCCCGGTTGAAAGAATCGTCACTACGCTGATCGAAGAGGGTTTCCCGACCAAGGGCTTCTCGGTGAAGGGG
AAAAGCTCGAACTGGGGTCCGCAGGCGGGGTTCATCTGTGTCGACCAGCATCTCAGCAAGCGGGAAAACCGC
GACACGGCGGAAATACGCAAGCTGAACCTGGCTGTGGCGAAGGGAATGGATGGCGGAGCCTATACCCAGACC
GACCTGCGTATCTCTCAGCAACGCCTTGCGGAGCTGGTGCGGAATTTCGGCCTGGTGGCAGACGGTGTCGGG
CCGGTTCGCCTCCTGACCGCGCAGGGCCCCAGCGGTAAACGCTATGAGTTCGAGGCCCGCCAGGAGCCGGAC
GGTCTCTACAGGATCAGCCGCCTGGGGCGGTCGGAAGCGGTGCAGGTACTGGCCAGCCCGGCTTGCGGGCTG
GCGATGACCGCCGATTATGACCTCTTCCTGGTAGCGCCCTCGATCGAGGCGCATGGCAATGGTGGTCTCGAT
GCAAGAAGGAATACCGCGGTCAGATACACCCCCCTCGGTGCAAAGGATCCCCTGAGCGAGGACGGATTCTAT
GGCAGGGAGGATATGGCCAGGGGAAACATCACTCCGCGCACGCGGCAACTGGTGGACGCCCTCAATGACTGC
CTGGGCCGGGGGGAGCACAGGGAGATGTTTCACCACAGCGACGATGCGGGCAACCCAGGCTCCCATATGGGT
GACAACTTCCCGGCCACCTTCTACCTTCCCCGGGCCATGGAGCATCGGCTCGGAGAAGAGTCCGTTCGCTTC
GATGAGGTCTGCGTGGTGGCGGATCGGAAGAGCTTTTCCTTGCTGGTCGAGTGCATCAAGGGCAACGGCTAT
CACTTCACCGCCCATCCCGACTGGAACGTGCCGCTGCGGCCCAGCTTCCAGGAGGCGCTCGACTTTTCCAAC
GTAAGGTCTGATGCGCGAAGGTCGTTGGCAAAGCCCGCTTTCCCCGGCGGCATGGGCATCCTGCCGCCTGTC
CAAGGCCTTCCGCTTGCCGGAATATGCTGGGCGGCGCGGGGAAGCTAG
Translation:
MRKTKNLSAFSDISPLPGFLFSTPSLAYAGKRTMRIDGHRQVVSNATAQPGPLLRPADMQARALQDLFDAQG
VGVPVEHALRMQAVARQTNTVFGIRPVERIVTTLIEEGFPTKGFSVKGKSSNWGPQAGFICVDQHLSKRENR
DTAEIRKLNLAVAKGMDGGAYTQTDLRISQQRLAELVRNFGLVADGVGPVRLLTAQGPSGKRYEFEARQEPD
GLYRISRLGRSEAVQVLASPACGLAMTADYDLFLVAPSIEAHGNGGLDARRNTAVRYTPLGAKDPLSEDGFY
GREDMARGNITPRTRQLVDALNDCLGRGEHREMFHHSDDAGNPGSHMGDNFPATFYLPRAMEHRLGEESVRF
DEVCVVADRKSFSLLVECIKGNGYHFTAHPDWNVPLRPSFQEALDFSNVRSDARRSLAKPAFPGGMGILPPV
QGLPLAGICWAARGS*
AnnotationID:5925GeneID:5924
AnnotatorUID: danlee
Modification Date/Time: 2006-03-21 20:08:43
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:4.6.1.1
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
GID5924 (PA14_36340) replaced by GID7430 (PA14_36345).


















    ReferenceID:15777




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28968




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38240




  
Author/Investigator(s):
        Yahr TL, Vallis AJ, Hancock MK, Barbieri JT, Frank DW.





  
Title:
        ExoY, an adenylate cyclase secreted by the Pseudomonas aeruginosa type III system.




  
PubMed:
        9811898


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 1998 Nov 10;95(23):13899-904.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=9811898









           
Homologs By Global Alignment 

           

       



     
Gene ID:5924
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7937
                           PA2191_tr
                           translation of PA2191
                           447
                           82.55
                           83.66
                           69
                           1933.0
     

     
     
197937
                           gb|AAG05579.1|AE004645_13
                           (AE004645) adenylate cyclase ExoY [Pseudomonas aeruginosa PAO1]
                           447
                           82.55
                           83.66
                           69
                           1933.0
     

     
     
197938
                           gb|AAC78299.1|
                           (AF061745) adenylate cyclase [Pseudomonas aeruginosa]
                           447
                           82.10
                           83.22
                           69
                           1921.0
     

     






      

          
GC ORFID: 48926How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1717271Stop: 1715928

          
Length: 1344


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2191 translation of PA2191Homolog Bit Score 751.0

          
Other Homologs:  t_PA2191 translation of PA2191 (BLASTP 751)

          
GC ORF Sequence

           
GTGCGGAAAACAAAAAATTTGTCCGCGTTTTCTGATATCTCGCCGCTGCCCGGATTCTTATTCTCGACTCCT 
TCTTTGGCATATGCGGGAAAACGAACCATGCGTATCGACGGTCATCGTCAGGTGGTTTCTAACGCAACGGCA 
CAGCCCGGACCGCTACTGCGCCCTGCGGATATGCAGGCACGGGCTCTACAGGACCTGTTCGATGCGCAGGGG 
GTGGGGGTTCCCGTCGAACATGCCTTGCGCATGCAGGCGGTGGCCAGGCAGACGAATACCGTCTTTGGCATT 
CGCCCGGTTGAAAGAATCGTCACTACGCTGATCGAAGAGGGTTTCCCGACCAAGGGCTTCTCGGTGAAGGGG 
AAAAGCTCGAACTGGGGTCCGCAGGCGGGGTTCATCTGTGTCGACCAGCATCTCAGCAAGCGGGAAAACCGC 
GACACGGCGGAAATACGCAAGCTGAACCTGGCTGTGGCGAAGGGAATGGATGGCGGAGCCTATACCCAGACC 
GACCTGCGTATCTCTCAGCAACGCCTTGCGGAGCTGGTGCGGAATTTCGGCCTGGTGGCAGACGGTGTCGGG 
CCGGTTCGCCTCCTGACCGCGCAGGGCCCCAGCGGTAAACGCTATGAGTTCGAGGCCCGCCAGGAGCCGGAC 
GGTCTCTACAGGATCAGCCGCCTGGGGCGGTCGGAAGCGGTGCAGGTACTGGCCAGCCCGGCTTGCGGGCTG 
GCGATGACCGCCGATTATGACCTCTTCCTGGTAGCGCCCTCGATCGAGGCGCATGGCAATGGTGGTCTCGAT 
GCAAGAAGGAATACCGCGGTCAGATACACCCCCCTCGGTGCAAAGGATCCCCTGAGCGAGGACGGATTCTAT 
GGCAGGGAGGATATGGCCAGGGGAAACATCACTCCGCGCACGCGGCAACTGGTGGACGCCCTCAATGACTGC 
CTGGGCCGGGGGGAGCACAGGGAGATGTTTCACCACAGCGACGATGCGGGCAACCCAGGCTCCCATATGGGT 
GACAACTTCCCGGCCACCTTCTACCTTCCCCGGGCCATGGAGCATCGGCTCGGAGAAGAGTCCGTTCGCTTC 
GATGAGGTCTGCGTGGTGGCGGATCGGAAGAGCTTTTCCTTGCTGGTCGAGTGCATCAAGGGCAACGGCTAT 
CACTTCACCGCCCATCCCGACTGGAACGTGCCGCTGCGGCCCAGCTTCCAGGAGGCGCTCGACTTTTCCAAC 
GTAAGGTCTGATGCGCGAAGGTCGTTGGCAAAGCCCGCTTTCCCCGGCGGCATGGGCATCCTGCCGCCTGTC 
CAAGGCCTTCCGCTTGCCGGAATATGCTGGGCGGCGCGGGGAAGCTAG