ViewGene
Locus Name:
GeneID:
Location:

GeneID:5922
TrivialName: PA14_36380
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36380
PAO1 Ortholog Locus:
Sequence Length:1230
Protein Length:409
Start: 3240694
Stop: 3241922
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
GeneID5922 (PA14_36380) replaced by GeneID7414 (PA14_36375). Homology: gb|AAG05568.1|AE004645_2 (AE004645) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 398/402 (99%), Positives = 398/402 (99%)
Sequence:
ATGACGACGACCTGCCgGaggGACCCCGCCGATTGGCCGGCCTGGCTCGATGCCGGGGCCCGGCGCACCGCC
GAGGCGCATGCCGAATACCTCCGGGCACGTCGGCGCGGCGAAGGGCGACGCTACTTCCAGGTTCCCTCCCAG
GCGATGCACTTCATTCGCAGCGTGGCCCCGACCAAGCTGGTCGATGGCGCCTGGCTCTATGGGCTGTTGCCG
CATCATGGCGAGGAACGCCTGCGGCCGCTGCTGGAGACCTTCCTCGAAGAACTCGGCGACGGCGTCCCGGCA
CGCAACCACGTCCTGCTCTACCGGCGCCTGCTGGCCAGCATCGGCAGCGAGGAAGTCGAAGGCCTCAGCGAC
CTGCACTACCTGCAGGGCACCCAGCAACTCGCCCTCGGCCACCTCGCCGCGGACTACCTGCCCGAAGTGATC
GGCTACAACCTCGGCTACGAGCAACCGCCGCTGCACCTGTTGATCACCACTCAGGAGCTGCGCGAGCTGGGC
TTCGACTCCTACTACTTCCAGTTGCACGTGACCATCGACAACGCCGCCAGCGGGCATGCGCGCAAGGCCCTG
CGCGCGCTCTACGACAACCTGCCGCAGCTTGGCGGGCGCGCGGCCTTCCTCGAACGGGTGAGGAACGGCTAC
CGCCTGAACGAGGTCGGCCTGAGCACCGAGCAGGTGATCGACGGCTTCGATCTCGAGGAAGAATTGCTGGCC
ATGTTCGAGCGCAAGCGCCCCTACGCCGCCGGTATGCATTCGGATCGTTGCCGGATCGGCGGGCGCACGGTG
AACCAGTGGCTGGCGGTGCCCGGGCGGTTCCCGGCGTTTCTCGCCTGCCTGGAGGAAGAGGGCTGGATCCGG
CGCCATGCCGATCCGCGCGGTAGCCGCTTCTGGAACCTGATCGAGGGCGACCGGGCGGCGATGTTCGGAGTC
TTCACTCCCTACGAGCAGCAGTTGCTGTACGACTGGATCGCTGGCGACTGGCAAGCCCCCGCTCCGGCGGAC
AGGGACCCGCTTGCGCCGCTGGCGGAGCCGGCGACGGCGGGCAGCGACGTGGACGCCGAGCAGGTCGCGCTG
CGACGCGAGCTGCTGCGGCTATCCCCCGAGCAGGGCGTCGCACGCCTTCTCGAACTGATGGCCCCGCACCGC
CACCACGGACCCGCCGGTCTCCTTGCCACGCGGATGTTCAGCCAGCGCTGGAGGGCCGCCCATGCCCAGCCT
GAATGA
Translation:
MTTTCRRDPADWPAWLDAGARRTAEAHAEYLRARRRGEGRRYFQVPSQAMHFIRSVAPTKLVDGAWLYGLLP
HHGEERLRPLLETFLEELGDGVPARNHVLLYRRLLASIGSEEVEGLSDLHYLQGTQQLALGHLAADYLPEVI
GYNLGYEQPPLHLLITTQELRELGFDSYYFQLHVTIDNAASGHARKALRALYDNLPQLGGRAAFLERVRNGY
RLNEVGLSTEQVIDGFDLEEELLAMFERKRPYAAGMHSDRCRIGGRTVNQWLAVPGRFPAFLACLEEEGWIR
RHADPRGSRFWNLIEGDRAAMFGVFTPYEQQLLYDWIAGDWQAPAPADRDPLAPLAEPATAGSDVDAEQVAL
RRELLRLSPEQGVARLLELMAPHRHHGPAGLLATRMFSQRWRAAHAQPE*
AnnotationID:5923GeneID:5922
AnnotatorUID: danlee
Modification Date/Time: 2006-03-10 17:05:28
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
GeneID5922 (PA14_36380) replaced by GeneID7414 (PA14_36375).


















    ReferenceID:11749




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28964




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5922
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7935
                           PA2180_tr
                           translation of PA2180
                           458
                           87.11
                           87.33
                           49
                           2102.0
     

     
     
197932
                           gb|AAG05568.1|AE004645_2
                           (AE004645) hypothetical protein PA2180 [Pseudomonas aeruginosa PAO1]
                           458
                           87.11
                           87.33
                           49
                           2102.0
     

     
     
197934
                           gb|AAN68858.1|AE016518_4
                           (AE016786) conserved hypothetical protein [Pseudomonas putida KT2440]
                           458
                           44.10
                           54.14
                           64
                           961.0
     

     
     
197933
                           gb|AAO58977.1|
                           (AE016876) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           486
                           44.03
                           56.17
                           80
                           1029.0
     

     






      

          
GC ORFID: 48924How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1713222Stop: 1711993

          
Length: 1230


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2180 translation of PA2180Homolog Bit Score 817.0

          
Other Homologs:  t_PA2180 translation of PA2180 (BLASTP 817), psyr_15may02_Scaffold2_revised_gene2942 related to: gi|15597376|ref|NP_250870.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||B83372 hypothetical protein PA2180 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05568.1|AE004645_2 (AE004645) hypothetical protein [Pseudomonas-TRUNCATED- (BLASTP 398), psyr_15may02_Scaffold3_revised_gene4718 related to: gi|15597376|ref|NP_250870.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||B83372 hypothetical protein PA2180 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05568.1|AE004645_2 (AE004645) hypothetical protein [Pseudomonas-TRUNCATED- (BLASTP 111)

          
GC ORF Sequence

           
ATGACGACGACCTGCCgGaggGACCCCGCCGATTGGCCGGCCTGGCTCGATGCCGGGGCCCGGCGCACCGCC 
GAGGCGCATGCCGAATACCTCCGGGCACGTCGGCGCGGCGAAGGGCGACGCTACTTCCAGGTTCCCTCCCAG 
GCGATGCACTTCATTCGCAGCGTGGCCCCGACCAAGCTGGTCGATGGCGCCTGGCTCTATGGGCTGTTGCCG 
CATCATGGCGAGGAACGCCTGCGGCCGCTGCTGGAGACCTTCCTCGAAGAACTCGGCGACGGCGTCCCGGCA 
CGCAACCACGTCCTGCTCTACCGGCGCCTGCTGGCCAGCATCGGCAGCGAGGAAGTCGAAGGCCTCAGCGAC 
CTGCACTACCTGCAGGGCACCCAGCAACTCGCCCTCGGCCACCTCGCCGCGGACTACCTGCCCGAAGTGATC 
GGCTACAACCTCGGCTACGAGCAACCGCCGCTGCACCTGTTGATCACCACTCAGGAGCTGCGCGAGCTGGGC 
TTCGACTCCTACTACTTCCAGTTGCACGTGACCATCGACAACGCCGCCAGCGGGCATGCGCGCAAGGCCCTG 
CGCGCGCTCTACGACAACCTGCCGCAGCTTGGCGGGCGCGCGGCCTTCCTCGAACGGGTGAGGAACGGCTAC 
CGCCTGAACGAGGTCGGCCTGAGCACCGAGCAGGTGATCGACGGCTTCGATCTCGAGGAAGAATTGCTGGCC 
ATGTTCGAGCGCAAGCGCCCCTACGCCGCCGGTATGCATTCGGATCGTTGCCGGATCGGCGGGCGCACGGTG 
AACCAGTGGCTGGCGGTGCCCGGGCGGTTCCCGGCGTTTCTCGCCTGCCTGGAGGAAGAGGGCTGGATCCGG 
CGCCATGCCGATCCGCGCGGTAGCCGCTTCTGGAACCTGATCGAGGGCGACCGGGCGGCGATGTTCGGAGTC 
TTCACTCCCTACGAGCAGCAGTTGCTGTACGACTGGATCGCTGGCGACTGGCAAGCCCCCGCTCCGGCGGAC 
AGGGACCCGCTTGCGCCGCTGGCGGAGCCGGCGACGGCGGGCAGCGACGTGGACGCCGAGCAGGTCGCGCTG 
CGACGCGAGCTGCTGCGGCTATCCCCCGAGCAGGGCGTCGCACGCCTTCTCGAACTGATGGCCCCGCACCGC 
CACCACGGACCCGCCGGTCTCCTTGCCACGCGGATGTTCAGCCAGCGCTGGAGGGCCGCCCATGCCCAGCCT 
GAATGA