ViewGene
Locus Name:
GeneID:
Location:

GeneID:5916
TrivialName: PA14_36610
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36610
PAO1 Ortholog Locus:
Sequence Length:348
Protein Length:115
Start: 3261272
Stop: 3261619
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
GeneID7206 (PA14_36600) and GeneID5916 (PA14_36610) by GeneID7424 (PA14_36605). Homology: gb|AAG05550.1|AE004643_3 (AE004643) probable glycosyl hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 114/115 (99%), Positives = 115/115 (100%)
Sequence:
ATGCAGCCGGGCCTGTTCCGCGACGGCGACTACCTGCCCCTGGAGGTCAGCGGCGAGCATGCCGAGCGGGTC
CTGGCCTTCGCCCGGCGCAGTCGTCACGGTTGCCTGCTGGTGGTGGTCCCGCGCCTGGCCTGCGCCCTGCTC
GGCCACGCCACGCAGCCGCAGGTGCCGGCCGAGGCCTGGGGCGACACCTGCCTGCTGCTGCCGCCGAGTCTC
TCCGAATGCACCTACAGCGGCCTGTTTTCCACCATGCCGCTGCCCAGCGACGGGCACCTGAGCCTGTCCGAA
GTGCTCGCCGACTTTCCCGTCAACCTGCTTTACCGCCTCGCCCAGGAGGAGACCCCATGA
Translation:
MQPGLFRDGDYLPLEVSGEHAERVLAFARRSRHGCLLVVVPRLACALLGHATQPQVPAEAWGDTCLLLPPSL
SECTYSGLFSTMPLPSDGHLSLSEVLADFPVNLLYRLAQEETP*
AnnotationID:5917GeneID:5916
AnnotatorUID: danlee
Modification Date/Time: 2006-03-13 12:12:37
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAN69643.1|AE016598_4 (AE016789) glycosyl hydrolase, putative [Pseudomonas putida KT2440]
          Length = 924

 Score =  100 bits (248), Expect = 2e-21
 Identities = 53/102 (51%), Positives = 67/102 (65%)

>gb|AAO56615.1| (AE016867) glycosyl hydrolase, family 13 [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 927

 Score = 91.7 bits (226), Expect = 7e-19
 Identities = 46/104 (44%), Positives = 67/104 (64%)







 
Structural Features:






   
Genomic Context:






   
Comment:
GeneID7206 (PA14_36600) and GeneID5916 (PA14_36610) by GeneID7424 (PA14_36605).


















    ReferenceID:11740




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28952




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32561




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5916_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5916
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7934
                           PA2162_tr
                           translation of PA2162
                           926
                           12.31
                           12.41
                           811
                           604.0
     

     
     
197930
                           gb|AAG05550.1|AE004643_3
                           (AE004643) probable glycosyl hydrolase [Pseudomonas aeruginosa PAO1]
                           926
                           12.31
                           12.41
                           811
                           604.0
     

     
     
197931
                           gb|AAN69643.1|AE016598_4
                           (AE016789) glycosyl hydrolase, putative [Pseudomonas putida KT2440]
                           929
                           5.70
                           7.42
                           819
                           243.0
     

     






      

          
GC ORFID: 48918How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1692642Stop: 1692295

          
Length: 348


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2162 translation of PA2162Homolog Bit Score 237.0

          
Other Homologs:  t_PA2162 translation of PA2162 (BLASTP 237)

          
GC ORF Sequence

           
ATGCAGCCGGGCCTGTTCCGCGACGGCGACTACCTGCCCCTGGAGGTCAGCGGCGAGCATGCCGAGCGGGTC 
CTGGCCTTCGCCCGGCGCAGTCGTCACGGTTGCCTGCTGGTGGTGGTCCCGCGCCTGGCCTGCGCCCTGCTC 
GGCCACGCCACGCAGCCGCAGGTGCCGGCCGAGGCCTGGGGCGACACCTGCCTGCTGCTGCCGCCGAGTCTC 
TCCGAATGCACCTACAGCGGCCTGTTTTCCACCATGCCGCTGCCCAGCGACGGGCACCTGAGCCTGTCCGAA 
GTGCTCGCCGACTTTCCCGTCAACCTGCTTTACCGCCTCGCCCAGGAGGAGACCCCATGA