ViewGene

Locus Name:
GeneID:
Location:

GeneID:5898
TrivialName: PA14_37240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37240
PAO1 Ortholog Locus:
Sequence Length:1560
Protein Length:519
Start: 3318317
Stop: 3316758
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK23765.1| (AE005853) hypothetical protein [Caulobacter crescentus CB15]
Identities = 104/410 (25%), Positives = 143/410 (34%), Gaps = 91/410 (22%)
Sequence:
ATGCATGCTGGGGTTTCCTCGGTCGACGGCTCAGAGTTCCAGTTGTTTGCCGCGGGTTTCCGGCAGGCTGAG
GGCGGCGAGGATCACCACGCCGTAGGAGACCGCGGCGAAGGCGCCGATCCCCAGGCCCAGCGAGAGCTTCTG
GCCGAGCATGCCGATCAGCATCGGGAACAGCGCGGCGATGGCGCGCCCGGCGTTGTAGCAGAAGCCCTGGCC
GGAGCCGCGGATGCGGGTCGGGAACAGTTCGGTGAGGAACGAGCCCATGCCGCTGAAGATGCCCGAGGCGAA
GAAGCCGAGCGGGAAGCCGAGCCAGAGCATGGCGCCGTTGCTTACCGGCAACTGGGTGTAGAGCAGGACCAC
GGTGAAGGAGCCGACGGCGAACAGGACGAAGTTCTTCTTGCGCCCGATCAGGTCGGTGAGGAAGGCACTGAC
CACGTAGCCGACGTAGGAGCCGAGGATCACCATCGCCAGGTAGCCGCTGGTGCCGAGCACGGTCAGCCCGCG
CTCGGTCTTGAGGAAGGTCGGCAGCCAGGCGGTGATGGCGTAGTAGCCGCCGAGGGCGCCGGTGGTCAGCAG
CGAGGCGCGCAGGGTGATGCTGAGCATCCCGGGGGCGAAGATCTCGTAGAAGCTGACCTTGTCGGCGCCCTG
GTTGCGCTGCCTGGCCTCGCGGTAGATCGCCGGTTCCTTGACCAGCCGACGCACCACCAGGACGAACAGTGC
CGGCAACAGGCCGAGCATGAACAGCGCGCGCCAGGCCTCCTCCGGCGGCAGCAGGCTGAACATCAGCGAGTA
GAGGATGGCGGTGAGGCCCCAGCCGATGGCCCAGCCGGACTGCACCAGGCCGACCGCCTTGCCGCGGTCGCG
GGCCTTGATCACTTCGCCGATGAGTACCGCGCCGGCGGTCCATTCGCCACCGAAGCCGAAGCCCATCAGGGT
CCGCGCGACCAGCAACTGCTCGTAGTTCTGCGCGAGGCCGCAGAGGAAGGTGAAGAAGGCGAACCAGAGCAC
CGTCAGTTGCAGGGTCAGCACCCGGCCGATGCGGTCGGAGAGGATCCCGGCGATCCAGCCGCCGGCGGCGGA
GGCGAGCAGGGTCATGGTGTGGATGAAGCCGGCTTCGCCGGTGCTGATCCCCCACAGGGCGATCAGGGTGGG
GATCACGAAGCTCAGCATCTGGGTGTCCATGCCGTCCAGGCCGTAGCCGATCTTGCAGCTCCAGAAGGCCCG
GCGTTCCTGCTTGTCGAGGGCGCGATACCAGCCGAAATGACCGTCCCGGGAAGCGTCCGGGCCGGCGTCGAG
GGTCATGTGTTTTTCCATGGGGGCACCGATCGTCGTTATTGGTGTTATGAGGATTCGGTGGGCGCCGTCGCA
CCCGGTGGTCGCATTCTTCGAGGCTGGCCAGCGAGCGTCCAACTAATTTATGCGGCCGCCGGGGATAAGAAA
TTTCGATGGCGGAGCAGGCCGTCATGCGTCGATCATGTGCCGCCGGAAGGCGGGCGCTGGCATGGAAGCTGC
TCGCTCCTGCCACCTTGTGTCCCTTGCCCGTCGGTGCCCGCCACATGA
Translation:
MHAGVSSVDGSEFQLFAAGFRQAEGGEDHHAVGDRGEGADPQAQRELLAEHADQHREQRGDGAPGVVAEALA
GAADAGREQFGEERAHAAEDARGEEAEREAEPEHGAVAYRQLGVEQDHGEGADGEQDEVLLAPDQVGEEGTD
HVADVGAEDHHRQVAAGAEHGQPALGLEEGRQPGGDGVVAAEGAGGQQRGAQGDAEHPGGEDLVEADLVGAL
VALPGLAVDRRFLDQPTHHQDEQCRQQAEHEQRAPGLLRRQQAEHQRVEDGGEAPADGPAGLHQADRLAAVA
GLDHFADEYRAGGPFATEAEAHQGPRDQQLLVVLREAAEEGEEGEPEHRQLQGQHPADAVGEDPGDPAAGGG
GEQGHGVDEAGFAGADPPQGDQGGDHEAQHLGVHAVQAVADLAAPEGPAFLLVEGAIPAEMTVPGSVRAGVE
GHVFFHGGTDRRYWCYEDSVGAVAPGGRILRGWPASVQLIYAAAGDKKFRWRSRPSCVDHVPPEGGRWHGSC
SLLPPCVPCPSVPAT*
AnnotationID:5899GeneID:5898
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 08:08:08
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:11706
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28916
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32588
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5898_cdd.html
URL:
GC ORFID: 48900How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1635597Stop: 1637156
Length: 1560
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCATGCTGGGGTTTCCTCGGTCGACGGCTCAGAGTTCCAGTTGTTTGCCGCGGGTTTCCGGCAGGCTGAG
GGCGGCGAGGATCACCACGCCGTAGGAGACCGCGGCGAAGGCGCCGATCCCCAGGCCCAGCGAGAGCTTCTG
GCCGAGCATGCCGATCAGCATCGGGAACAGCGCGGCGATGGCGCGCCCGGCGTTGTAGCAGAAGCCCTGGCC
GGAGCCGCGGATGCGGGTCGGGAACAGTTCGGTGAGGAACGAGCCCATGCCGCTGAAGATGCCCGAGGCGAA
GAAGCCGAGCGGGAAGCCGAGCCAGAGCATGGCGCCGTTGCTTACCGGCAACTGGGTGTAGAGCAGGACCAC
GGTGAAGGAGCCGACGGCGAACAGGACGAAGTTCTTCTTGCGCCCGATCAGGTCGGTGAGGAAGGCACTGAC
CACGTAGCCGACGTAGGAGCCGAGGATCACCATCGCCAGGTAGCCGCTGGTGCCGAGCACGGTCAGCCCGCG
CTCGGTCTTGAGGAAGGTCGGCAGCCAGGCGGTGATGGCGTAGTAGCCGCCGAGGGCGCCGGTGGTCAGCAG
CGAGGCGCGCAGGGTGATGCTGAGCATCCCGGGGGCGAAGATCTCGTAGAAGCTGACCTTGTCGGCGCCCTG
GTTGCGCTGCCTGGCCTCGCGGTAGATCGCCGGTTCCTTGACCAGCCGACGCACCACCAGGACGAACAGTGC
CGGCAACAGGCCGAGCATGAACAGCGCGCGCCAGGCCTCCTCCGGCGGCAGCAGGCTGAACATCAGCGAGTA
GAGGATGGCGGTGAGGCCCCAGCCGATGGCCCAGCCGGACTGCACCAGGCCGACCGCCTTGCCGCGGTCGCG
GGCCTTGATCACTTCGCCGATGAGTACCGCGCCGGCGGTCCATTCGCCACCGAAGCCGAAGCCCATCAGGGT
CCGCGCGACCAGCAACTGCTCGTAGTTCTGCGCGAGGCCGCAGAGGAAGGTGAAGAAGGCGAACCAGAGCAC
CGTCAGTTGCAGGGTCAGCACCCGGCCGATGCGGTCGGAGAGGATCCCGGCGATCCAGCCGCCGGCGGCGGA
GGCGAGCAGGGTCATGGTGTGGATGAAGCCGGCTTCGCCGGTGCTGATCCCCCACAGGGCGATCAGGGTGGG
GATCACGAAGCTCAGCATCTGGGTGTCCATGCCGTCCAGGCCGTAGCCGATCTTGCAGCTCCAGAAGGCCCG
GCGTTCCTGCTTGTCGAGGGCGCGATACCAGCCGAAATGACCGTCCCGGGAAGCGTCCGGGCCGGCGTCGAG
GGTCATGTGTTTTTCCATGGGGGCACCGATCGTCGTTATTGGTGTTATGAGGATTCGGTGGGCGCCGTCGCA
CCCGGTGGTCGCATTCTTCGAGGCTGGCCAGCGAGCGTCCAACTAATTTATGCGGCCGCCGGGGATAAGAAA
TTTCGATGGCGGAGCAGGCCGTCATGCGTCGATCATGTGCCGCCGGAAGGCGGGCGCTGGCATGGAAGCTGC
TCGCTCCTGCCACCTTGTGTCCCTTGCCCGTCGGTGCCCGCCACATGA