ViewGene
Locus Name:
GeneID:
Location:

GeneID:5891
TrivialName: PA14_37500
AnnotatorUID: diggins
Modification Date/Time:2006-04-23 19:07:20
LocusName:PA14_37500
PAO1 Ortholog Locus:
Sequence Length:882
Protein Length:293
Start: 3338454
Stop: 3339335
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAE42907.1| (BX640419) putative GTP-binding protein [Bordetella pertussis]
Identities = 76/308 (24%), Positives = 121/308 (39%), Gaps = 49/308 (15%)
Sequence:
TTGCGCATAAGGTTATGCCTCGCCCTCCCGCGCCCGGCAGCGCCAGACGCTGACCGGGATTTCGCTGACCTG
TCCGTCGGCCTGCATGCGCCGCTCGGCGATCCGCCCGAGGCGGACGAAGAATTCCTCCAGGCGCGTCGCCGG
CACCAGCGGTGCGAAATAGGTGCCGAAGGTGGCGGCGTGGAAACGCTGGTACTCGGCGGAGTCGGCGACGCG
CAGGGCCGCCGGGCGGGAGACGATGGAGTCGACCCGGAAGTGCCGTTCGACGCGTTCGCGCAACGCCTCCCG
GCCACGGGTGCGGGTGCCCATCGGCAGCAGCCCGGCTTCCGCGTAGAGCGCCGCCACCCGCTCCGGCGCGGC
CAGGCCCATCTCGACCAGGGCCTGGGCGACCAGGTCGTCCTCGCCGCCGAGGCCATCCTCGGCGAACGGATG
GTGCGAGGTGAACAGGAATACCCCCTGCGCCTCGAGGTGCCGCGCGACCCACCGGAACAGCCGCTCTTCGTC
GGGATACAGCCAGTGCAGCACGGCGGTCATGCTGATCAGCTCGAAGCGTTCCGCCAGCGGCGGCAGGTCGAG
CAGGTCGCCCTCCAGCAGACGCGCCTCGACGCCAGCCCCGCGCAACTGCGCGCGCGCCTGCTCCAGGCGCAG
CGGCGAACGCTCGATGCCCCACAACCGTTGCAGGCCGGGCCAGCGCCGGGCGGCGCCGAGCAGCAGCGAGCC
GATGCCGCAGCCGAGATCGAGCAGGCTGCGCGGCTCGATGCCGGCGCGGTCGAGCACCCAGTCCTGGTCGCG
ACGTTGCAGCAGTTCGCTGGAATCCTGGTAGCCGTCCAGGCTGCGCGCCTGTTCAATGATCGCGTTCATGTA
CGCCTGCTCCTTGGTTGA
Translation:
MRIRLCLALPRPAAPDADRDFADLSVGLHAPLGDPPEADEEFLQARRRHQRCEIGAEGGGVETLVLGGVGDA
QGRRAGDDGVDPEVPFDAFAQRLPATGAGAHRQQPGFRVERRHPLRRGQAHLDQGLGDQVVLAAEAILGERM
VRGEQEYPLRLEVPRDPPEQPLFVGIQPVQHGGHADQLEAFRQRRQVEQVALQQTRLDASPAQLRARLLQAQ
RRTLDAPQPLQAGPAPGGAEQQRADAAAEIEQAARLDAGAVEHPVLVATLQQFAGILVAVQAARLFNDRVHV
RLLLG*
AnnotationID:5892GeneID:5891
AnnotatorUID: diggins
Modification Date/Time: 2006-04-23 19:07:31
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15754




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28902




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48893How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1615460Stop: 1614579

          
Length: 882


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
TTGCGCATAAGGTTATGCCTCGCCCTCCCGCGCCCGGCAGCGCCAGACGCTGACCGGGATTTCGCTGACCTG 
TCCGTCGGCCTGCATGCGCCGCTCGGCGATCCGCCCGAGGCGGACGAAGAATTCCTCCAGGCGCGTCGCCGG 
CACCAGCGGTGCGAAATAGGTGCCGAAGGTGGCGGCGTGGAAACGCTGGTACTCGGCGGAGTCGGCGACGCG 
CAGGGCCGCCGGGCGGGAGACGATGGAGTCGACCCGGAAGTGCCGTTCGACGCGTTCGCGCAACGCCTCCCG 
GCCACGGGTGCGGGTGCCCATCGGCAGCAGCCCGGCTTCCGCGTAGAGCGCCGCCACCCGCTCCGGCGCGGC 
CAGGCCCATCTCGACCAGGGCCTGGGCGACCAGGTCGTCCTCGCCGCCGAGGCCATCCTCGGCGAACGGATG 
GTGCGAGGTGAACAGGAATACCCCCTGCGCCTCGAGGTGCCGCGCGACCCACCGGAACAGCCGCTCTTCGTC 
GGGATACAGCCAGTGCAGCACGGCGGTCATGCTGATCAGCTCGAAGCGTTCCGCCAGCGGCGGCAGGTCGAG 
CAGGTCGCCCTCCAGCAGACGCGCCTCGACGCCAGCCCCGCGCAACTGCGCGCGCGCCTGCTCCAGGCGCAG 
CGGCGAACGCTCGATGCCCCACAACCGTTGCAGGCCGGGCCAGCGCCGGGCGGCGCCGAGCAGCAGCGAGCC 
GATGCCGCAGCCGAGATCGAGCAGGCTGCGCGGCTCGATGCCGGCGCGGTCGAGCACCCAGTCCTGGTCGCG 
ACGTTGCAGCAGTTCGCTGGAATCCTGGTAGCCGTCCAGGCTGCGCGCCTGTTCAATGATCGCGTTCATGTA 
CGCCTGCTCCTTGGTTGA