ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5888

TrivialName: PA14_37620

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_37620

PAO1 Ortholog Locus:

Sequence Length: 1863

Protein Length: 620

Start: 3349136

Stop: 3347274

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAA46093.1| (X64876) orfA [Bordetella pertussis] Identities = 78/266 (29%), Positives = 105/266 (39%), Gaps = 34/266 (12%)

Sequence:

ATGGCTGACGACGTCTGCGTCCCCACAGGGCAGAGCGATGCAGTGCGCTCGATGGCTGGGCGTGCCGCCACT
TCGTCCCTGACGGGAGCGCGCCGGCCGCGGCGCGCCGCGGGCCGGAACGTCCGGTTGGGCACTACGCTACGG
AGTCGCGGCGGCCGGCGGGTAATGCTTTTTGTGCGACGGAAAAGGTATGGGGAACGGAACCGCCCGGTCCGG
AAAGGGCGCGCCGGTCGTGCTTCGCCCTGCGCGCCAGGTTCGCAGGGCGGAGAGCGCCTAGGGCGTTGCCCG
TTCTATCGGACAATCCCTGCCGGGCTTGCGGACGAAGACCAGGTAGAGTGCGCTGAGCAGCGCGAGGAACGG
CACGCCGAAGACCAGGGTCATGCGGAACGCCTCGGTGAAGAAGGTGGTGACCAGGATCGCCGCCATCAGCGC
CAGGCCGAGCAATGTCGACCAGGGCGCCAGGCGCATGCGGAAGGCCAGCGGCGCGCCGCCGTGGCGGGCGCG
GTGGCGGCGGAAGCAGAGGTGGGTGAAGAAGATCATCAGCCAGGTGAAGAGGGCGCCGAACATCGACACCGC
CATCATCAGGGTGAAGGACTGCTCGGGGTAGACCAGGTTGAGCAGGGTCGCCAGGGCGATACCGACGCTCGA
CAGCAGCAGCGCGTTCAGCGGCACGCCCTGGCGGCTCAGTTCGCCGAGGCCCTTCGGCGCGTGCCCCGCGCG
CGACAGGCTGAACATCATCCGGGTGGTGATGTAGAGCTGGCTGTTCATCGCCGACAGCGCGGCCACCAGGAC
CACGAAGTTCATCACGCCGGTCGCGCCGGGCAGGCCGATCGCCTGCATCACCGTGACGAACGGGCTCTGGCT
CTGCCCGGCCTGGTCCCAGGGGACGATGGCGAGCATCAGCGCCAGGGTCAGCAGGTAGAACACCACCAGGCG
CACGATGGTCGAGCGGAACGCCGACTTCACCGCCTGTTCCGGATGCTCGGCCTCGGCGGCGGCGACCGCGAT
CATCTCCACGCTGAGATAGCTGAAGATCGACACCACCACGGCGATCCACATGCCTTTCAGGCCGTGCGGGAA
GAAGCCGCCGTGGGCGCTGTAGTTGTGCACGCCGTAGGCCGGGTTGGCGGAGCCGAACACCAGGTAGGCGCC
GAGCAGGATGAAGGCGACGATGGCGGCGATCTTCAGTGTCGAGAAGCAGTATTCGAAGTTGCCGAAGGCTTT
CACGCTGCTGGCGTTCAGGCCGATCAGCAGGGTCGAGAAGGAGATGATCCAGACCCATTCCGGGATACCGGC
GAACCAGTACTTCATGTACATGGCCACCGCCGTGACCTCGGTGCCCACCGCCAGGACGATGGCCGCCCAATA
GGCGTAGCGCACCAGGAACCCGGCCAGCGGGCCGACGTAGTGCTCGGCGAAGGCGCCGAACGAGCCGGGGGT
GGCGTGGGCCACGGTCATTTCCGCCAGGCAGCCCATCAGCAGCAGGGTGATCAGCGCGCCGATGGCATAGCT
GAGCAGGACGCTGGGGCCGGCGAAACCGATGGCGAAGGCGCTGCCCATGAACAGGCCGGTGCCGATGGCGCC
GCCGATGGCGATCATGCTCATCTGCGCGGCCGAGAGCCGCCGTTGCAGGCCCTGTTCGCGGCGCGAGATGGC
CTCGAAGCCCTGGGGGTCGTTCATCTGGATGTCCTCTGGAATCTTATTGGGGTTCTTATGAATTGCCGAGGG
AACGTCGGTGGCGATGTGCGGGTGCCGGTCGCGGGCTCCTGTGCGCGAGAGCGGTGGGTGTTCGCGGGCCGC
CCCGGGAATACCGGCGCGGCCCGCGCGAGCGGGGCTCAGGTCACCTTGTGCCGGACCTGGTAG

Translation:

MADDVCVPTGQSDAVRSMAGRAATSSLTGARRPRRAAGRNVRLGTTLRSRGGRRVMLFVRRKRYGERNRPVR
KGRAGRASPCAPGSQGGERLGRCPFYRTIPAGLADEDQVECAEQREERHAEDQGHAERLGEEGGDQDRRHQR
QAEQCRPGRQAHAEGQRRAAVAGAVAAEAEVGEEDHQPGEEGAEHRHRHHQGEGLLGVDQVEQGRQGDTDAR
QQQRVQRHALAAQFAEALRRVPRARQAEHHPGGDVELAVHRRQRGHQDHEVHHAGRAGQADRLHHRDERALA
LPGLVPGDDGEHQRQGQQVEHHQAHDGRAERRLHRLFRMLGLGGGDRDHLHAEIAEDRHHHGDPHAFQAVRE
EAAVGAVVVHAVGRVGGAEHQVGAEQDEGDDGGDLQCREAVFEVAEGFHAAGVQADQQGREGDDPDPFRDTG
EPVLHVHGHRRDLGAHRQDDGRPIGVAHQEPGQRADVVLGEGAERAGGGVGHGHFRQAAHQQQGDQRADGIA
EQDAGAGETDGEGAAHEQAGADGAADGDHAHLRGREPPLQALFAARDGLEALGVVHLDVLWNLIGVLMNCRG
NVGGDVRVPVAGSCARERWVFAGRPGNTGAARASGAQVTLCRTW*

AnnotationID:5889 GeneID:5888

AnnotatorUID: diggins

Modification Date/Time: 2005-03-03 06:06:08

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:11688

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28896