ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5885

TrivialName: PA14_37720

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_37720

PAO1 Ortholog Locus:

Sequence Length: 3477

Protein Length: 1158

Start: 3364790

Stop: 3361314

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAB94077.2| (AF111796) adhesin [Bordetella bronchiseptica] Identities = 222/948 (23%), Positives = 331/948 (34%), Gaps = 163/948 (17%)

Sequence:

TTGCATGGCACCGGGAGCCCAACAACCTGCCAGATCTGGTCGCCTGCGAAATCTGGCAGGGCTACCGGATCT
GGTAGCTGGACAGCCGTCGACGGGCTTGCCGGCCATACCGGCCGGGCGCCCGCGCCGGCATCAGAAGCTGTA
GCTGAGGCGGCCGAACAGGATGCGCCCGTAGGGATCGGTGTAGCGCGGGTCGTAGCCGCTCTGGAAGGTGTA
GGTCTGGTTGCTGAACGGCGGTTCGCGGTCGAACAGGTTCTTCACCCCGAGGGTCAGCCCCAGCGCATGGCT
GAGGCGGTAGCTGCCGGCCAGGTCCCAGAGGTTCCACGAGCCGACCCTGCCGTGGCTGGCGCGATCGTAGTC
GTTGTAGCCGCTGGTGTAGCGGTTGCTCAGGGTGGCCTGCCaggcGTCGCGGCTCCAGGTGGCGTTGGCGAC
GTGctTCCAGCGGGCGATCACGCCGACGCCCTGGAAGTCGCCGACGTTGTCCAGGTACTGGCCGCCGATCTG
CTGCTGGAAGTCGTAGCGGGACACGTAGGTGCCTTGCAGGTCGAGCCCGAACTGCCCGTAGCGGCTGGCCGG
GAAACGATAATCGAGGCTCAGGTCGACGCCGCTGGTCTTCACTTTGCCGAGGTTGGCCAGTCCGGTGACGAC
GTGATCGATCGAGCCGTCGGCCTTGCGCACGATGCGTCCGGCGTAGGCCTGCGGGTCGGCGAAGATCGCCGC
TTCGGGAAACTCGGCGATCTGGTTGGCGATCCTGATCCACCAGAAGTCCAGGCCGACGGAAAGGTCGCGCAG
CGGCTGGTAGACCAGGCCCAGGGTAACGTTGCGCGCGGTTTCCGGTCGCAGGTCGGTGTTGCCGCCGGTGGC
GTTGTAGAACTGCTGGGCGCAGTCGCGGTTGGCGATGCCGCCCTGGCTCGGCTGGCCGCCGGCGCACAGGCG
TGGGTCGTCGTAGTTGGCGCTGGTATAGGTGGTGAAGGTCGGGTTGTACAGTTCGTACAGCGACGGCGCGCG
GAAACCTTCGCTGTAGGCGCCGCGCAGGACCAACTGGCGGAACGGCTGGAAGCGGAACGAATATTTCGGGTT
GGTAGTGCTGCCGAAGTCGCTGTACTTGTCGTGGCGGATCGCCGCGCTGAGTTCCAGGCTGTCCAGCACCGG
CACGTTGAGTTCGGCGTACTGCGCCTTCAGGTTGCGCTCGCCGCTGACCGTGGCGGCGGGATCGACGCCGAG
GCTCTGCACGTTGCCGGCGAAGTCCTGGATGTCCTGGTGGAACGCTTCCTTGCGGAATTCGCCGCCCAGCGC
CAGGGCCGCCGGCCCGGCGCCGAACCAGTCGCCGATCTCCCGGCTGGCGCGGGCGTCCAGGCCCTTGACGCG
GCCGACCGAGGTACGGAAGTCGCCGCTCAGGGCATGGCTGCCGAGGTAGGCGAGGCCGGCGTCGGTCTGCGG
CCCGAACGGGTTCAGCGTCCCGTTGGCGATGCCGAGGGCGGCGGCGCGATCGTCGACGTAGCCGCTGTGGAT
ATGGTCGACCACCTTGTTCTGGTTGTACGAGGCGCCGATATCGTAGTCCCAGCCGGCGAACTGGCCGTCGAA
GCCGAGCAGCAGGCGCTGGCCGGTGTTCTGCGAGGATTGCAGGCGTGGCCCGAGCACGCTCTGCCGCCAGTT
GACCTCCACCGGCCGGCTCGGGTCGAGGACGAAGCCGCCGGGACCGGGAGTGATGCCGTTGCCGGGATAGAA
GGCGGTGCCGGGATCGATCTGCAGGCCGGTGAGGGTCCCTGGGCCGACCTGGGTAGCGTTGTCGTTGCGCGA
CCAGAAGTACTCCAGGCTGACGTTGTGCTCGTCGGCCAGCTTGCCGGTGGCGCGGCTGAACACCGAGGTCTT
CTCGGTTTCCGGCACCAGGTCGAGGTAGCGCCACAGGCTCTGCCGGCAGATGCCGTTGCGCGGGATCAGGTC
GGCGCCCTTGCAACCGCCGGCGGCCAGCGGATTGCTGGCGTTGGCGCCCTGGCTCCAGTTGCCGGGGAAGGC
GGTGCCGGAGCTGTAGTCGAGGCCGCGTCCCGGCTGGTAGTTGTAGGTGTAGCCGCGGTCCTTGGCGCCGAG
GCGTTCCTGCTTGTCGTAGTTGGCCACCGCGAAGACATTGAAGCGATCCTCCTCCAGCTCGCCGAAGCCCCA
GCTAGCGCTGACGTTGCGCTGGTTGCCGCCGCCGTCCTGGGTGGGGGAGGCGTAGCCGCTGTCGACGCGGCC
TTCGTTCAGGCTCTTGCGGGTGATGAAGTTGATCACCCCGCCGATGGCATCGGTGCCGTACAGTGCGGAGGC
GCCGTCGCGCAGCACCTCGACCCGGTCGATGGCGGCGAAGGGAATGGTGTTGAGATCCACGGCGGAGCCGTC
GATGGCATTGTTCGCCAGACGCCGGCCGTTGAGCAGCACCAGGGTCTTGTTCGCGCCGATCCCGCGCAGGTC
GGCGAACGAGGCGCCGCCGGTGGCGCTGCCGACCGAGCGACTGGAGTTGTATACGCCCTGGTTGCCGGAAAG
CCGGCCGATCAGTTCCTCGGTGCTGGTCACGCCCTGTTGGCGCAGCTCCTCGGCGCGCAGGACGCTGATCGG
CACCGCGGTTTCCGCATCGACCCGGCGGATCGCGCTACCGGTCACCTCGATTCGTTGCAACTGGACCGTGGG
CGGGTCGACAGGCGCCTGTCCCTCCGCCGCGGCGGCGCTGCTGGGAGCGAGCTGCAGGGCCAGCAGCAGGGC
GGCGCCCAGCGGCGGGTCGGTGTGGAGCGATCGGTGCATGGTCGGGGCATCCCTTGTTCCGGTGTGTCCAGG
GATGTCCGTCGAGCCGGGGGATTTTCCAGGGACGGCTTAGACCTTTGCGCCATGAGTTTATGTCCGCTGGGA
ACAAGCCCTGCCGTTGCGCCTTTCATCGGCGGGCCGGAGCGGCAGAACCAGTCCCCTCTGCCGAGGTCGAAA
AGCAGGCGTCGCGGCGGTGCTGTGGCGTCCTTTCTTCAGCTACATTTTTCTTTCAGCAGTCGTTCCCATCAT
CCAGGGCAGCACCCAAGGGGCAGATCATGGCTCGCACCACTCCCATCGAGCTTTATCGCAACATCGGCATCG
TCGCCCACGTCGACGCCGGCAAGACCACGACGACCGAGCGGATCCTCTTCTACACCGGCGTCAACCACAAGA
TGGGCGAGGTCCATGACGGCGCGGCGACCATGGACTGGATGGTCCAGGAGCAGGAGCGCGGCATCACCATCA
CCTCGGCGGCGACCACGGCCTTCTGGCAGGGCTCGACCAAGCAGTTCCCGCACCGCTATCGCTTCAACATCA
TCGACACCCCCGGCCACGTCGACTTCACCATCGAGGTGGAGCGCTCGCTGCGCGTGCTCGATGGCGCGGTGG
TGGTGTTCAGCGGCGCCGACGGGGTCGAGCCGCAGTCCGAGACGGTCTGGCGCCAGGCCAACAAGTACCATG
TGCCGCGCCTGGCCTACGTGA

Translation:

MHGTGSPTTCQIWSPAKSGRATGSGSWTAVDGLAGHTGRAPAPASEAVAEAAEQDAPVGIGVARVVAALEGV
GLVAERRFAVEQVLHPEGQPQRMAEAVAAGQVPEVPRADPAVAGAIVVVVAAGVAVAQGGLPGVAAPGGVGD
VLPAGDHADALEVADVVQVLAADLLLEVVAGHVGALQVEPELPVAAGRETIIEAQVDAAGLHFAEVGQSGDD
VIDRAVGLAHDASGVGLRVGEDRRFGKLGDLVGDPDPPEVQADGKVAQRLVDQAQGNVARGFRSQVGVAAGG
VVELLGAVAVGDAALARLAAGAQAWVVVVGAGIGGEGRVVQFVQRRRAETFAVGAAQDQLAERLEAERIFRV
GSAAEVAVLVVADRRAEFQAVQHRHVEFGVLRLQVALAADRGGGIDAEALHVAGEVLDVLVERFLAEFAAQR
QGRRPGAEPVADLPAGAGVQALDAADRGTEVAAQGMAAEVGEAGVGLRPERVQRPVGDAEGGGAIVDVAAVD
MVDHLVLVVRGADIVVPAGELAVEAEQQALAGVLRGLQAWPEHALPPVDLHRPARVEDEAAGTGSDAVAGIE
GGAGIDLQAGEGPWADLGSVVVARPEVLQADVVLVGQLAGGAAEHRGLLGFRHQVEVAPQALPADAVARDQV
GALATAGGQRIAGVGALAPVAGEGGAGAVVEAASRLVVVGVAAVLGAEAFLLVVVGHREDIEAILLQLAEAP
ASADVALVAAAVLGGGGVAAVDAAFVQALAGDEVDHPADGIGAVQCGGAVAQHLDPVDGGEGNGVEIHGGAV
DGIVRQTPAVEQHQGLVRADPAQVGERGAAGGAADRATGVVYALVAGKPADQFLGAGHALLAQLLGAQDADR
HRGFRIDPADRATGHLDSLQLDRGRVDRRLSLRRGGAAGSELQGQQQGGAQRRVGVERSVHGRGIPCSGVSR
DVRRAGGFSRDGLDLCAMSLCPLGTSPAVAPFIGGPERQNQSPLPRSKSRRRGGAVASFLQLHFSFSSRSHH
PGQHPRGRSWLAPLPSSFIATSASSPTSTPARPRRPSGSSSTPASTTRWARSMTARRPWTGWSRSRSAASPS
PRRRPRPSGRARPSSSRTAIASTSSTPPATSTSPSRWSARCACSMARWWCSAAPTGSSRSPRRSGARPTSTM
CRAWPT*

AnnotationID:5886 GeneID:5885

AnnotatorUID: diggins

Modification Date/Time: 2004-06-18 12:12:48

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:15749

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28890

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32630

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 5885_cdd.html

URL:

GC ORFID: `48887`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `1589124`	Stop: `1592600`
Length: `3477`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCATGGCACCGGGAGCCCAACAACCTGCCAGATCTGGTCGCCTGCGAAATCTGGCAGGGCTACCGGATCT GGTAGCTGGACAGCCGTCGACGGGCTTGCCGGCCATACCGGCCGGGCGCCCGCGCCGGCATCAGAAGCTGTA GCTGAGGCGGCCGAACAGGATGCGCCCGTAGGGATCGGTGTAGCGCGGGTCGTAGCCGCTCTGGAAGGTGTA GGTCTGGTTGCTGAACGGCGGTTCGCGGTCGAACAGGTTCTTCACCCCGAGGGTCAGCCCCAGCGCATGGCT GAGGCGGTAGCTGCCGGCCAGGTCCCAGAGGTTCCACGAGCCGACCCTGCCGTGGCTGGCGCGATCGTAGTC GTTGTAGCCGCTGGTGTAGCGGTTGCTCAGGGTGGCCTGCCaggcGTCGCGGCTCCAGGTGGCGTTGGCGAC GTGctTCCAGCGGGCGATCACGCCGACGCCCTGGAAGTCGCCGACGTTGTCCAGGTACTGGCCGCCGATCTG CTGCTGGAAGTCGTAGCGGGACACGTAGGTGCCTTGCAGGTCGAGCCCGAACTGCCCGTAGCGGCTGGCCGG GAAACGATAATCGAGGCTCAGGTCGACGCCGCTGGTCTTCACTTTGCCGAGGTTGGCCAGTCCGGTGACGAC GTGATCGATCGAGCCGTCGGCCTTGCGCACGATGCGTCCGGCGTAGGCCTGCGGGTCGGCGAAGATCGCCGC TTCGGGAAACTCGGCGATCTGGTTGGCGATCCTGATCCACCAGAAGTCCAGGCCGACGGAAAGGTCGCGCAG CGGCTGGTAGACCAGGCCCAGGGTAACGTTGCGCGCGGTTTCCGGTCGCAGGTCGGTGTTGCCGCCGGTGGC GTTGTAGAACTGCTGGGCGCAGTCGCGGTTGGCGATGCCGCCCTGGCTCGGCTGGCCGCCGGCGCACAGGCG TGGGTCGTCGTAGTTGGCGCTGGTATAGGTGGTGAAGGTCGGGTTGTACAGTTCGTACAGCGACGGCGCGCG GAAACCTTCGCTGTAGGCGCCGCGCAGGACCAACTGGCGGAACGGCTGGAAGCGGAACGAATATTTCGGGTT GGTAGTGCTGCCGAAGTCGCTGTACTTGTCGTGGCGGATCGCCGCGCTGAGTTCCAGGCTGTCCAGCACCGG CACGTTGAGTTCGGCGTACTGCGCCTTCAGGTTGCGCTCGCCGCTGACCGTGGCGGCGGGATCGACGCCGAG GCTCTGCACGTTGCCGGCGAAGTCCTGGATGTCCTGGTGGAACGCTTCCTTGCGGAATTCGCCGCCCAGCGC CAGGGCCGCCGGCCCGGCGCCGAACCAGTCGCCGATCTCCCGGCTGGCGCGGGCGTCCAGGCCCTTGACGCG GCCGACCGAGGTACGGAAGTCGCCGCTCAGGGCATGGCTGCCGAGGTAGGCGAGGCCGGCGTCGGTCTGCGG CCCGAACGGGTTCAGCGTCCCGTTGGCGATGCCGAGGGCGGCGGCGCGATCGTCGACGTAGCCGCTGTGGAT ATGGTCGACCACCTTGTTCTGGTTGTACGAGGCGCCGATATCGTAGTCCCAGCCGGCGAACTGGCCGTCGAA GCCGAGCAGCAGGCGCTGGCCGGTGTTCTGCGAGGATTGCAGGCGTGGCCCGAGCACGCTCTGCCGCCAGTT GACCTCCACCGGCCGGCTCGGGTCGAGGACGAAGCCGCCGGGACCGGGAGTGATGCCGTTGCCGGGATAGAA GGCGGTGCCGGGATCGATCTGCAGGCCGGTGAGGGTCCCTGGGCCGACCTGGGTAGCGTTGTCGTTGCGCGA CCAGAAGTACTCCAGGCTGACGTTGTGCTCGTCGGCCAGCTTGCCGGTGGCGCGGCTGAACACCGAGGTCTT CTCGGTTTCCGGCACCAGGTCGAGGTAGCGCCACAGGCTCTGCCGGCAGATGCCGTTGCGCGGGATCAGGTC GGCGCCCTTGCAACCGCCGGCGGCCAGCGGATTGCTGGCGTTGGCGCCCTGGCTCCAGTTGCCGGGGAAGGC GGTGCCGGAGCTGTAGTCGAGGCCGCGTCCCGGCTGGTAGTTGTAGGTGTAGCCGCGGTCCTTGGCGCCGAG GCGTTCCTGCTTGTCGTAGTTGGCCACCGCGAAGACATTGAAGCGATCCTCCTCCAGCTCGCCGAAGCCCCA GCTAGCGCTGACGTTGCGCTGGTTGCCGCCGCCGTCCTGGGTGGGGGAGGCGTAGCCGCTGTCGACGCGGCC TTCGTTCAGGCTCTTGCGGGTGATGAAGTTGATCACCCCGCCGATGGCATCGGTGCCGTACAGTGCGGAGGC GCCGTCGCGCAGCACCTCGACCCGGTCGATGGCGGCGAAGGGAATGGTGTTGAGATCCACGGCGGAGCCGTC GATGGCATTGTTCGCCAGACGCCGGCCGTTGAGCAGCACCAGGGTCTTGTTCGCGCCGATCCCGCGCAGGTC GGCGAACGAGGCGCCGCCGGTGGCGCTGCCGACCGAGCGACTGGAGTTGTATACGCCCTGGTTGCCGGAAAG CCGGCCGATCAGTTCCTCGGTGCTGGTCACGCCCTGTTGGCGCAGCTCCTCGGCGCGCAGGACGCTGATCGG CACCGCGGTTTCCGCATCGACCCGGCGGATCGCGCTACCGGTCACCTCGATTCGTTGCAACTGGACCGTGGG CGGGTCGACAGGCGCCTGTCCCTCCGCCGCGGCGGCGCTGCTGGGAGCGAGCTGCAGGGCCAGCAGCAGGGC GGCGCCCAGCGGCGGGTCGGTGTGGAGCGATCGGTGCATGGTCGGGGCATCCCTTGTTCCGGTGTGTCCAGG GATGTCCGTCGAGCCGGGGGATTTTCCAGGGACGGCTTAGACCTTTGCGCCATGAGTTTATGTCCGCTGGGA ACAAGCCCTGCCGTTGCGCCTTTCATCGGCGGGCCGGAGCGGCAGAACCAGTCCCCTCTGCCGAGGTCGAAA AGCAGGCGTCGCGGCGGTGCTGTGGCGTCCTTTCTTCAGCTACATTTTTCTTTCAGCAGTCGTTCCCATCAT CCAGGGCAGCACCCAAGGGGCAGATCATGGCTCGCACCACTCCCATCGAGCTTTATCGCAACATCGGCATCG TCGCCCACGTCGACGCCGGCAAGACCACGACGACCGAGCGGATCCTCTTCTACACCGGCGTCAACCACAAGA TGGGCGAGGTCCATGACGGCGCGGCGACCATGGACTGGATGGTCCAGGAGCAGGAGCGCGGCATCACCATCA CCTCGGCGGCGACCACGGCCTTCTGGCAGGGCTCGACCAAGCAGTTCCCGCACCGCTATCGCTTCAACATCA TCGACACCCCCGGCCACGTCGACTTCACCATCGAGGTGGAGCGCTCGCTGCGCGTGCTCGATGGCGCGGTGG TGGTGTTCAGCGGCGCCGACGGGGTCGAGCCGCAGTCCGAGACGGTCTGGCGCCAGGCCAACAAGTACCATG TGCCGCGCCTGGCCTACGTGA