ViewGene
Locus Name:
GeneID:
Location:

GeneID:5884
TrivialName: PA14_37740
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37740
PAO1 Ortholog Locus:
Sequence Length:1851
Protein Length:616
Start: 3364766
Stop: 3366615
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
GeneID5884 (PA14_37740) and GeneID5883 (PA14_37750) replaced by GeneID7413 (PA14_37745). Homology: gb|AAG05457.1|AE004633_8 (AE004633) probable carbamoyl transferase [Pseudomonas aeruginosa PAO1]
Identities = 274/275 (99%), Positives = 274/275 (99%)
Sequence:
TTGTTGGGCTCCCGGTGCCATGCAACCTATTACGCCTCTCGCCCCCCACCCGTTCGCGCAAGAGGACACCGC
ATGATCATTCTCGGGATCACCAACAACGACCTGGCCGGCGCCTGCCTGGTGCGCGACGGCGGGATCGTCGCC
GCCGCCAGCGAGGAGCGCTTCACCCGCCAGAAGGACCACAAGGCCTGGCCGAGCCGCTCCATCGACTATGTG
CTCGGCGAGGCCGGCATCGACCTGGCCGACATCGACCGCATCGCCTACGGCTGGAACGCCGGGTTCGACGCC
GGGCGGCACCTCGACCTCTACCTGGACCGGGTCCTCGAGGAAACCCGCGAGCGTCCCGAGGGCCTGCCGCAC
CTGCGCAAGCGGATCGCCGACGAGATGGCCAACGACAAGGCCAAGCGCGGCGAATTCGATGCCTTCGTCCGC
GCCAACGGCCTGCGCGGCAAGGTCGAGTACATCGACCATCACGAATGCCACGCCCTCGGCGCATTCGTCTGC
TCGCCGTTCGACGAGGCGCTGACCCTCACCTGCGACGGCCGCGGCGACTTCCAGTCGCTCACCGTCACCCAC
TACCGCGCCGACGGCGGCGAGACGGTCCTGCAACGCGAGACCAGCGTCGACAGCCTGGGCTACTTCTACGGG
CGCATCACCCGCCTGCTCGGCTTCAAGCCGAACCGCCACGAAGGCAAGATCACCGGCCTGGCGGCGTTCGGC
GACGCGGAAAAGCTGCTGCCGCTGATGAACGACATGATCCGCCTGGAGAACGGCCGCCTGCGCGCCCGCTGC
GGCGAACTGTACCTGCCCTCCTACGACGGCTACAGCGATCCGCTGCTGCAACGCTGCGCGGCGGAACGCCCG
GCGGATGTCGCCGCCGCCGCGCAACGGCACTCcggaagACCTGCTGGTGGCCATCGCCCGGCAGCACgTGGC
GCGCACCGGTTGCGCCAACCTGTGCCTGGCCGGCGGGGTGTTCGGCAACGTCAAGCTGAACCAGCGCCTGCG
CGAGATCCCCGGggTCCGCGATGTCTACGTGCTGCCCTGCATGGGCGACGGCGGCCTGGCCCTGGCCGCGGC
GGTGGCGGTGGCCTATCGCGAGAACGGTACGCGCTTCCCGGCGCCGAGCATGGCCCTCGGGCCGGACGCGCG
CAGCGCCGCGCAGAATGCCGAGCTGATCGCCAGCCAGTACCCGCAGCTGGCCTACAGCCGGCCAGCCAACCT
GATCGAGACGCTGGTCGAAGCGCTGCGGGAAAACCAGGTGCTGGGCATGTTCAAGGGCCGCATGGAGTTCGG
TCCGCGCGCCTTGTGCAACCGCAGCATCGTCTACCATCCCGGCGATGCCAGCGCCAACGACTGGCTCAATCA
GCGCATGGAACGCACCGAGTTCATGCCATTCGCCCCGGTCACCGCGGTCGAGCACGCCGAGGGCTGCTACAT
CGGCTGGCGCGAAGACCAGGTGGCGGCCGACTACATGACCATGACCTACGACTGCCATGCGGATTTCCGCGA
GCGCTGCCCGGCGGTGGTGCATGTCGACGGCACCGCCCGGCCGCAGATCATCCGGCCGCAGGCCGATCCGTT
CATGCACGCCCTGCTGCATGCCTGGCATGCCCGCAGCGGCCAGCCGGCGCTGATCAACACCTCCTTCAACCG
CCACGAGGAACCGATCGTCTGCGCCCCGCAGGACGCCCTCGGCGCGCTGGAGGACGGCATGGTCGACCTGGT
GGTGCTGGGCGAGTCCCTGCTGGTCTGGCGCAAGGGCGAGAACGCCTTCGCCAGGGCGCGCTTCGAGTGAGG
CGCAAACCGCAGCGAACCGGCACGGCGACGCGGGAACCGGCATGTACCTGA
Translation:
MLGSRCHATYYASRPPPVRARGHRMIILGITNNDLAGACLVRDGGIVAAASEERFTRQKDHKAWPSRSIDYV
LGEAGIDLADIDRIAYGWNAGFDAGRHLDLYLDRVLEETRERPEGLPHLRKRIADEMANDKAKRGEFDAFVR
ANGLRGKVEYIDHHECHALGAFVCSPFDEALTLTCDGRGDFQSLTVTHYRADGGETVLQRETSVDSLGYFYG
RITRLLGFKPNRHEGKITGLAAFGDAEKLLPLMNDMIRLENGRLRARCGELYLPSYDGYSDPLLQRCAAERP
ADVAAAAQRHSGRPAGGHRPAARGAHRLRQPVPGRRGVRQRQAEPAPARDPRGPRCLRAALHGRRRPGPGRG
GGGGLSRERYALPGAEHGPRAGRAQRRAECRADRQPVPAAGLQPASQPDRDAGRSAAGKPGAGHVQGPHGVR
SARLVQPQHRLPSRRCQRQRLAQSAHGTHRVHAIRPGHRGRARRGLLHRLARRPGGGRLHDHDLRLPCGFPR
ALPGGGACRRHRPAADHPAAGRSVHARPAACLACPQRPAGADQHLLQPPRGTDRLRPAGRPRRAGGRHGRPG
GAGRVPAGLAQGRERLRQGALRVRRKPQRTGTATREPACT*
AnnotationID:5885GeneID:5884
AnnotatorUID: danlee
Modification Date/Time: 2006-03-10 17:05:38
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2192
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2192, COG2192, Predicted carbamoyl transferase, NodU family 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 555 residues, only  48.5% aligned          
Score =  265 bits (680), Expect = 7e-72
Identities = 118/283 (41%), Positives = 149/283 (52%), Gaps = 22/283 (7%)






   
Genomic Context:






   
Comment:
GeneID5884 (PA14_37740) and GeneID5883 (PA14_37750) replaced by GeneID7413 (PA14_37745).


















    ReferenceID:15747




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28888




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32631




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5884_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5884
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7932
                           PA2069_tr
                           translation of PA2069
                           687
                           51.81
                           55.60
                           184
                           1469.0
     

     
     
197923
                           gb|AAG05457.1|AE004633_8
                           (AE004633) probable carbamoyl transferase [Pseudomonas aeruginosa PAO1]
                           687
                           51.81
                           55.60
                           184
                           1469.0
     

     






      

          
GC ORFID: 48886How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1589148Stop: 1587298

          
Length: 1851


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2069 translation of PA2069Homolog Bit Score 561.0

          
Other Homologs:  t_PA2069 translation of PA2069 (BLASTP 561)

          
GC ORF Sequence

           
TTGTTGGGCTCCCGGTGCCATGCAACCTATTACGCCTCTCGCCCCCCACCCGTTCGCGCAAGAGGACACCGC 
ATGATCATTCTCGGGATCACCAACAACGACCTGGCCGGCGCCTGCCTGGTGCGCGACGGCGGGATCGTCGCC 
GCCGCCAGCGAGGAGCGCTTCACCCGCCAGAAGGACCACAAGGCCTGGCCGAGCCGCTCCATCGACTATGTG 
CTCGGCGAGGCCGGCATCGACCTGGCCGACATCGACCGCATCGCCTACGGCTGGAACGCCGGGTTCGACGCC 
GGGCGGCACCTCGACCTCTACCTGGACCGGGTCCTCGAGGAAACCCGCGAGCGTCCCGAGGGCCTGCCGCAC 
CTGCGCAAGCGGATCGCCGACGAGATGGCCAACGACAAGGCCAAGCGCGGCGAATTCGATGCCTTCGTCCGC 
GCCAACGGCCTGCGCGGCAAGGTCGAGTACATCGACCATCACGAATGCCACGCCCTCGGCGCATTCGTCTGC 
TCGCCGTTCGACGAGGCGCTGACCCTCACCTGCGACGGCCGCGGCGACTTCCAGTCGCTCACCGTCACCCAC 
TACCGCGCCGACGGCGGCGAGACGGTCCTGCAACGCGAGACCAGCGTCGACAGCCTGGGCTACTTCTACGGG 
CGCATCACCCGCCTGCTCGGCTTCAAGCCGAACCGCCACGAAGGCAAGATCACCGGCCTGGCGGCGTTCGGC 
GACGCGGAAAAGCTGCTGCCGCTGATGAACGACATGATCCGCCTGGAGAACGGCCGCCTGCGCGCCCGCTGC 
GGCGAACTGTACCTGCCCTCCTACGACGGCTACAGCGATCCGCTGCTGCAACGCTGCGCGGCGGAACGCCCG 
GCGGATGTCGCCGCCGCCGCGCAACGGCACTCcggaagACCTGCTGGTGGCCATCGCCCGGCAGCACgTGGC 
GCGCACCGGTTGCGCCAACCTGTGCCTGGCCGGCGGGGTGTTCGGCAACGTCAAGCTGAACCAGCGCCTGCG 
CGAGATCCCCGGggTCCGCGATGTCTACGTGCTGCCCTGCATGGGCGACGGCGGCCTGGCCCTGGCCGCGGC 
GGTGGCGGTGGCCTATCGCGAGAACGGTACGCGCTTCCCGGCGCCGAGCATGGCCCTCGGGCCGGACGCGCG 
CAGCGCCGCGCAGAATGCCGAGCTGATCGCCAGCCAGTACCCGCAGCTGGCCTACAGCCGGCCAGCCAACCT 
GATCGAGACGCTGGTCGAAGCGCTGCGGGAAAACCAGGTGCTGGGCATGTTCAAGGGCCGCATGGAGTTCGG 
TCCGCGCGCCTTGTGCAACCGCAGCATCGTCTACCATCCCGGCGATGCCAGCGCCAACGACTGGCTCAATCA 
GCGCATGGAACGCACCGAGTTCATGCCATTCGCCCCGGTCACCGCGGTCGAGCACGCCGAGGGCTGCTACAT 
CGGCTGGCGCGAAGACCAGGTGGCGGCCGACTACATGACCATGACCTACGACTGCCATGCGGATTTCCGCGA 
GCGCTGCCCGGCGGTGGTGCATGTCGACGGCACCGCCCGGCCGCAGATCATCCGGCCGCAGGCCGATCCGTT 
CATGCACGCCCTGCTGCATGCCTGGCATGCCCGCAGCGGCCAGCCGGCGCTGATCAACACCTCCTTCAACCG 
CCACGAGGAACCGATCGTCTGCGCCCCGCAGGACGCCCTCGGCGCGCTGGAGGACGGCATGGTCGACCTGGT 
GGTGCTGGGCGAGTCCCTGCTGGTCTGGCGCAAGGGCGAGAACGCCTTCGCCAGGGCGCGCTTCGAGTGAGG 
CGCAAACCGCAGCGAACCGGCACGGCGACGCGGGAACCGGCATGTACCTGA