ViewGene
Locus Name:
GeneID:
Location:

GeneID:5883
TrivialName: PA14_37750
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37750
PAO1 Ortholog Locus:
Sequence Length:888
Protein Length:295
Start: 3365675
Stop: 3366562
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
GeneID5884 (PA14_37740) and GeneID5883 (PA14_37750) replaced by GeneID7413 (PA14_37745). Homology: gb|AAG05457.1|AE004633_8 (AE004633) probable carbamoyl transferase [Pseudomonas aeruginosa PAO1]
Identities = 289/295 (97%), Positives = 292/295 (98%)
Sequence:
GTGGCCATCGCCCGGCAGCACgTGGCGCGCACCGGTTGCGCCAACCTGTGCCTGGCCGGCGGGGTGTTCGGC
AACGTCAAGCTGAACCAGCGCCTGCGCGAGATCCCCGGggTCCGCGATGTCTACGTGCTGCCCTGCATGGGC
GACGGCGGCCTGGCCCTGGCCGCGGCGGTGGCGGTGGCCTATCGCGAGAACGGTACGCGCTTCCCGGCGCCG
AGCATGGCCCTCGGGCCGGACGCGCGCAGCGCCGCGCAGAATGCCGAGCTGATCGCCAGCCAGTACCCGCAG
CTGGCCTACAGCCGGCCAGCCAACCTGATCGAGACGCTGGTCGAAGCGCTGCGGGAAAACCAGGTGCTGGGC
ATGTTCAAGGGCCGCATGGAGTTCGGTCCGCGCGCCTTGTGCAACCGCAGCATCGTCTACCATCCCGGCGAT
GCCAGCGCCAACGACTGGCTCAATCAGCGCATGGAACGCACCGAGTTCATGCCATTCGCCCCGGTCACCGCG
GTCGAGCACGCCGAGGGCTGCTACATCGGCTGGCGCGAAGACCAGGTGGCGGCCGACTACATGACCATGACC
TACGACTGCCATGCGGATTTCCGCGAGCGCTGCCCGGCGGTGGTGCATGTCGACGGCACCGCCCGGCCGCAG
ATCATCCGGCCGCAGGCCGATCCGTTCATGCACGCCCTGCTGCATGCCTGGCATGCCCGCAGCGGCCAGCCG
GCGCTGATCAACACCTCCTTCAACCGCCACGAGGAACCGATCGTCTGCGCCCCGCAGGACGCCCTCGGCGCG
CTGGAGGACGGCATGGTCGACCTGGTGGTGCTGGGCGAGTCCCTGCTGGTCTGGCGCAAGGGCGAGAACGCC
TTCGCCAGGGCGCGCTTCGAGTGA
Translation:
MAIARQHVARTGCANLCLAGGVFGNVKLNQRLREIPGVRDVYVLPCMGDGGLALAAAVAVAYRENGTRFPAP
SMALGPDARSAAQNAELIASQYPQLAYSRPANLIETLVEALRENQVLGMFKGRMEFGPRALCNRSIVYHPGD
ASANDWLNQRMERTEFMPFAPVTAVEHAEGCYIGWREDQVAADYMTMTYDCHADFRERCPAVVHVDGTARPQ
IIRPQADPFMHALLHAWHARSGQPALINTSFNRHEEPIVCAPQDALGALEDGMVDLVVLGESLLVWRKGENA
FARARFE*
AnnotationID:5884GeneID:5883
AnnotatorUID: danlee
Modification Date/Time: 2006-03-10 17:05:55
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2192
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAL81256.1| (AE010223) putative carbamoyl transferase [Pyrococcus furiosus DSM
           3638]
          Length = 536

 Score =  160 bits (404), Expect = 1e-38
 Identities = 100/270 (37%), Positives = 145/270 (53%), Gaps = 13/270 (4%)

>gb|AAM01314.1| (AE010309) Predicted carbamoyl transferase, NodU family
           [Methanopyrus kandleri AV19]
          Length = 515

 Score =  151 bits (382), Expect = 4e-36
 Identities = 99/272 (36%), Positives = 140/272 (51%), Gaps = 11/272 (4%)








 
Structural Features:
COG2192, COG2192, Predicted carbamoyl transferase, NodU family 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 555 residues, only  50.5% aligned
Score =  338 bits (868), Expect = 5e-94
Identities = 118/286 (41%), Positives = 156/286 (54%), Gaps = 9/286 (3%)








   
Genomic Context:






   
Comment:
GeneID5884 (PA14_37740) and GeneID5883 (PA14_37750) replaced by GeneID7413 (PA14_37745).


















    ReferenceID:15745




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28886




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5883
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7931
                           PA2069_tr
                           translation of PA2069
                           574
                           50.52
                           50.87
                           279
                           1537.0
     

     
     
197922
                           gb|AAG05457.1|AE004633_8
                           (AE004633) probable carbamoyl transferase [Pseudomonas aeruginosa PAO1]
                           574
                           50.52
                           50.87
                           279
                           1537.0
     

     






      

          
GC ORFID: 48885How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1588238Stop: 1587351

          
Length: 888


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2069 translation of PA2069Homolog Bit Score 596.0

          
Other Homologs:  t_PA2069 translation of PA2069 (BLASTP 596)

          
GC ORF Sequence

           
GTGGCCATCGCCCGGCAGCACgTGGCGCGCACCGGTTGCGCCAACCTGTGCCTGGCCGGCGGGGTGTTCGGC 
AACGTCAAGCTGAACCAGCGCCTGCGCGAGATCCCCGGggTCCGCGATGTCTACGTGCTGCCCTGCATGGGC 
GACGGCGGCCTGGCCCTGGCCGCGGCGGTGGCGGTGGCCTATCGCGAGAACGGTACGCGCTTCCCGGCGCCG 
AGCATGGCCCTCGGGCCGGACGCGCGCAGCGCCGCGCAGAATGCCGAGCTGATCGCCAGCCAGTACCCGCAG 
CTGGCCTACAGCCGGCCAGCCAACCTGATCGAGACGCTGGTCGAAGCGCTGCGGGAAAACCAGGTGCTGGGC 
ATGTTCAAGGGCCGCATGGAGTTCGGTCCGCGCGCCTTGTGCAACCGCAGCATCGTCTACCATCCCGGCGAT 
GCCAGCGCCAACGACTGGCTCAATCAGCGCATGGAACGCACCGAGTTCATGCCATTCGCCCCGGTCACCGCG 
GTCGAGCACGCCGAGGGCTGCTACATCGGCTGGCGCGAAGACCAGGTGGCGGCCGACTACATGACCATGACC 
TACGACTGCCATGCGGATTTCCGCGAGCGCTGCCCGGCGGTGGTGCATGTCGACGGCACCGCCCGGCCGCAG 
ATCATCCGGCCGCAGGCCGATCCGTTCATGCACGCCCTGCTGCATGCCTGGCATGCCCGCAGCGGCCAGCCG 
GCGCTGATCAACACCTCCTTCAACCGCCACGAGGAACCGATCGTCTGCGCCCCGCAGGACGCCCTCGGCGCG 
CTGGAGGACGGCATGGTCGACCTGGTGGTGCTGGGCGAGTCCCTGCTGGTCTGGCGCAAGGGCGAGAACGCC 
TTCGCCAGGGCGCGCTTCGAGTGA