ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5878

TrivialName: PA14_37930

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_37930

PAO1 Ortholog Locus:

Sequence Length: 1620

Protein Length: 539

Start: 3386954

Stop: 3385337

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: TRUE

Missense Discrepancy: TRUE

Comments:
Homology: gb|AAK53451.1| (AY032926) putative PHA synthase [Streptomyces aureofaciens] Identities = 112/364 (30%), Positives = 130/364 (35%), Gaps = 73/364 (20%)

Sequence:

TTGGTCTGGCCTATAGTTGGATGTTTCCATGCTGCTTCGCCACCTGCGCTACCTGCTCGCTGTCGCCGAGCA
TCGCAACTTCACCCGCGCCGCCGAGGCGCTGCACGTTTCGCAGCCGACCCTGTCGCAGCAGGTGCGGCAACT
GGAAGAGCAACTGCGCGTGCAATTGCTCGACCGCTCCGGCAGGAGCGTGCGTCCCACCGATGCCGGCGAGTT
GTACCTGCTTCATGCGCGGCGTGCCTTGCGCGAGCTGGAAGCGGCGCAACGGGCGATCCACGAGGTGCGCGA
CCTCAGTCGCGGCCGCCTGCGCCTGGGCATGACGCCGACCTTCACCTGCTATCTGGTGGGCGCCCTGGTGGA
TCCGTTCAATCAGCGCTATCCAGGCATCGAGTTGAGCCTCGAGGAGTTGCCCCAGGACGCCCTGGAGGCGGC
GCTGATCGACGATCGCCTGGACCTTGGCGTGGCCTTCAGCGAACCGGGTTCGCTGGAGATCGACAGCCAGCC
GCTCTACCTGGAGCGCCTGGGCCTGGTGCTGGGGGCGGAACACCCGGCGGCGGACGCACCGCTGGCCGCCGC
AGCGCTGGCGGAGTTGCCGTTGGCGTTGTTGCGCGACGACTTCGCCACGCGCCGGCACATCGACGCTTACCT
GCGCCAGCAAGGGGTGACGGCGCGGGTGGCGCTGGAGGCGAACTCGATCAGCGCCATCGTCGACGTGGTTCG
CCGCGGACGGCTGGCCAGCATCCTGCCAGAGGCGGTGGCGCGCCAGCAGGCCGGGTTGCGCTGCGTGGCGCT
GCGGCCGGCGTTGCCGACCCGCCAGGTAGCGCTGTTCTGGCGCCAGGGCAGCCATCCCGGCGCCGCGCGCCT
GGCCTTCCAGGCCCTGGCGCTGGAACTCGGCGCCGAGCTGGGCGACGCCTGAGCGGGATCAGCCGCGACTCG
GCTGCAACGCCGCGGGTTCCTCGCGGCGCAGAcGCAagggccaGggcgggcGCCAAACAGGGCGAGCAGGGC
GCTGAGCGCGGTCACCCATTCGATGCCGCGCGCCTGGCTGGCCAGCAGGCTGGCGGCATCGGCGCCGCGCAC
CTGGGCGTTGGCCAGCGCCACCAGCAGGGCCAGGCCGAGCGCGCCGCCGATCTGCTGGGTCATCGAGGCCAT
CCCCGAGGCGACGCCCTGTTCGGCGGGATCGACGCCGCTGGCGGCGCTGACCCACATGGCGGTCCAGGTCAT
GCCCTGGCCGACGCTGAGGATCACGATGGCCGGCAGCAGCGCCAGGAAGCCGCGCCCCAGCGGCAGGCACGC
TGCCAGCAGGCCGAGCCCGAGTGCGCCCAGCAGCAGGCCGGCGACCAGCGTCGCGCGTGCCCCGTGGCGGGC
CAGCAGGCGCTCGGCGACGCGGATACCGAGGGTACAGAGCAGAGTCGCCGGGAGGAACGCCAGGCCGGTCTG
CAACACGCTGTAGCCGTACACCGACTGGAAGTAGATGGCCAGGAAGTAGTACTGCACGCCGTAGCTGCTCAT
GAAGATCGCGGTCAGCAGCATCGCCACCTGCAGGTTGCGGTTGCCCAGCAGGCGCAGCGGCATCAGCGGGTC
GCGGCTGTAGTGTTCGATGGCGAGGAACGCCAGTAG

Translation:

MVWPIVGCFHAASPPALPARCRRASQLHPRRRGAARFAADPVAAGAATGRATARAIARPLRQERASHRCRRV
VPASCAACLARAGSGATGDPRGARPQSRPPAPGHDADLHLLSGGRPGGSVQSALSRHRVEPRGVAPGRPGGG
ADRRSPGPWRGLQRTGFAGDRQPAALPGAPGPGAGGGTPGGGRTAGRRSAGGVAVGVVARRLRHAPAHRRLP
APARGDGAGGAGGELDQRHRRRGSPRTAGQHPARGGGAPAGRVALRGAAAGVADPPGSAVLAPGQPSRRRAP
GLPGPGAGTRRRAGRRLSGISRDSAATPRVPRGADARARAGAKQGEQGAERGHPFDAARLAGQQAGGIGAAH
LGVGQRHQQGQAERAADLLGHRGHPRGDALFGGIDAAGGADPHGGPGHALADAEDHDGRQQRQEAAPQRQAR
CQQAEPECAQQQAGDQRRACPVAGQQALGDADTEGTEQSRREERQAGLQHAVAVHRLEVDGQEVVLHAVAAH
EDRGQQHRHLQVAVAQQAQRHQRVAAVVFDGEERQ*

AnnotationID:5879 GeneID:5878

AnnotatorUID: diggins

Modification Date/Time: 2004-06-18 17:05:51

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:15739

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28876

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32640

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 5878_cdd.html

URL:

GC ORFID: `48880`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `1566957`	Stop: `1568576`
Length: `1620`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGGTCTGGCCTATAGTTGGATGTTTCCATGCTGCTTCGCCACCTGCGCTACCTGCTCGCTGTCGCCGAGCA TCGCAACTTCACCCGCGCCGCCGAGGCGCTGCACGTTTCGCAGCCGACCCTGTCGCAGCAGGTGCGGCAACT GGAAGAGCAACTGCGCGTGCAATTGCTCGACCGCTCCGGCAGGAGCGTGCGTCCCACCGATGCCGGCGAGTT GTACCTGCTTCATGCGCGGCGTGCCTTGCGCGAGCTGGAAGCGGCGCAACGGGCGATCCACGAGGTGCGCGA CCTCAGTCGCGGCCGCCTGCGCCTGGGCATGACGCCGACCTTCACCTGCTATCTGGTGGGCGCCCTGGTGGA TCCGTTCAATCAGCGCTATCCAGGCATCGAGTTGAGCCTCGAGGAGTTGCCCCAGGACGCCCTGGAGGCGGC GCTGATCGACGATCGCCTGGACCTTGGCGTGGCCTTCAGCGAACCGGGTTCGCTGGAGATCGACAGCCAGCC GCTCTACCTGGAGCGCCTGGGCCTGGTGCTGGGGGCGGAACACCCGGCGGCGGACGCACCGCTGGCCGCCGC AGCGCTGGCGGAGTTGCCGTTGGCGTTGTTGCGCGACGACTTCGCCACGCGCCGGCACATCGACGCTTACCT GCGCCAGCAAGGGGTGACGGCGCGGGTGGCGCTGGAGGCGAACTCGATCAGCGCCATCGTCGACGTGGTTCG CCGCGGACGGCTGGCCAGCATCCTGCCAGAGGCGGTGGCGCGCCAGCAGGCCGGGTTGCGCTGCGTGGCGCT GCGGCCGGCGTTGCCGACCCGCCAGGTAGCGCTGTTCTGGCGCCAGGGCAGCCATCCCGGCGCCGCGCGCCT GGCCTTCCAGGCCCTGGCGCTGGAACTCGGCGCCGAGCTGGGCGACGCCTGAGCGGGATCAGCCGCGACTCG GCTGCAACGCCGCGGGTTCCTCGCGGCGCAGAcGCAagggccaGggcgggcGCCAAACAGGGCGAGCAGGGC GCTGAGCGCGGTCACCCATTCGATGCCGCGCGCCTGGCTGGCCAGCAGGCTGGCGGCATCGGCGCCGCGCAC CTGGGCGTTGGCCAGCGCCACCAGCAGGGCCAGGCCGAGCGCGCCGCCGATCTGCTGGGTCATCGAGGCCAT CCCCGAGGCGACGCCCTGTTCGGCGGGATCGACGCCGCTGGCGGCGCTGACCCACATGGCGGTCCAGGTCAT GCCCTGGCCGACGCTGAGGATCACGATGGCCGGCAGCAGCGCCAGGAAGCCGCGCCCCAGCGGCAGGCACGC TGCCAGCAGGCCGAGCCCGAGTGCGCCCAGCAGCAGGCCGGCGACCAGCGTCGCGCGTGCCCCGTGGCGGGC CAGCAGGCGCTCGGCGACGCGGATACCGAGGGTACAGAGCAGAGTCGCCGGGAGGAACGCCAGGCCGGTCTG CAACACGCTGTAGCCGTACACCGACTGGAAGTAGATGGCCAGGAAGTAGTACTGCACGCCGTAGCTGCTCAT GAAGATCGCGGTCAGCAGCATCGCCACCTGCAGGTTGCGGTTGCCCAGCAGGCGCAGCGGCATCAGCGGGTC GCGGCTGTAGTGTTCGATGGCGAGGAACGCCAGTAG