ViewGene
Locus Name:
GeneID:
Location:

GeneID:5877
TrivialName: PA14_37960
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37960
PAO1 Ortholog Locus:
Sequence Length:537
Protein Length:178
Start: 3387743
Stop: 3388278
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
Inactivated 2/01/06. PA14_37960 (GeneID 5877) and PA14_37970 (GeneID 5876) replaced by PA14_37965 (GeneID 7379). Homology: gb|AAG05440.1|AE004631_9 (AE004631) cyanate lyase [Pseudomonas aeruginosa PAO1]
Identities = 71/79 (89%), Positives = 74/79 (93%)
Sequence:
ATGCAaCACAGCCAAGTGTCCCCCaaCGCGCGCCAGCAACTGGCCGAGACCGTgGTcctgaaCaAGGCCCGC
CTGGGCctgtcctggcaGgatctgGCCGACGGCACCGgtatcgcccTgacattagtcaccgccgccatgttc
ggccagcatgccctgccagaggcggcggcgcgcaaggtcgccgcccaactcggcatggacgacgacgCGGtg
CtcctgcttgcaaAGCATCCCGCTGcGcggCAGCATTCCCGGCGGCATTCCCAGCGACCCGACCATCTACCG
CTTCTACGAGATGCTGCAAGTCTACGGCAGCACCCTGAAGGCACTGGTCCACGAACAGTTCGGCGACGGCAT
CATCAGCGCGATCAACTTCAAGCTGGACATCAAGAAGGTCGAGGACCCGGAAGGCGGCTCGCGGGCGGTGAT
CACCCTCGACGGCAAGTACCTGCCGACCAAACCGTTCTGAAGCGTCGCGCCGCCCGGCTCGCCGCCGGGCGC
GCGCCTCAGCGGCTGGCGATGCTGACCCAGTAG
Translation:
MQHSQVSPNARQQLAETVVLNKARLGLSWQDLADGTGIALTLVTAAMFGQHALPEAAARKVAAQLGMDDDAV
LLLAKHPAARQHSRRHSQRPDHLPLLRDAASLRQHPEGTGPRTVRRRHHQRDQLQAGHQEGRGPGRRLAGGD
HPRRQVPADQTVLKRRAARLAAGRAPQRLAMLTQ*
AnnotationID:5878GeneID:5877
AnnotatorUID: danlee
Modification Date/Time: 2006-02-01 16:04:51
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):central intermediary metabolism
EC Number:4.3.99.1
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAG54689.1|AE005213_5 (AE005213) cyanate aminohydrolase, cyanase [Escherichia coli
          O157:H7 EDL933]
          Length = 156

 Score = 79.7 bits (195), Expect = 7e-15
 Identities = 40/79 (50%), Positives = 57/79 (72%)








 
Structural Features:






   
Genomic Context:






   
Comment:
Inactivated 2/01/06. PA14_37960 (GeneID 5877) and PA14_37970 (GeneID 5876) replaced by PA14_37965 (GeneID 7379).


















    ReferenceID:11667




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28874




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32650




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5877_cdd.html


    		




 
URL:

















    ReferenceID:34394




  
Author/Investigator(s):
        FEMS Microbiol Rev. 1990 Dec;7(3-4):247-52





  
Title:
        The cyanase operon and cyanate metabolism.




  
PubMed:
        2094285


MedLine:
        




    
Source:
FEMS Microbiol Rev. 1990 Dec;7(3-4):247-52.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=2094285

















    ReferenceID:34395




  
Author/Investigator(s):
        Sung YC, Fuchs JA.





  
Title:
        Identification and characterization of a cyanate permease in Escherichia coli K-12.




  
PubMed:
        2670891


MedLine:
        




    
Source:
J Bacteriol. 1989 Sep;171(9):4674-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2670891

















    ReferenceID:34398




  
Author/Investigator(s):
        Sung YC, Fuchs JA.





  
Title:
        Characterization of the cyn operon in Escherichia coli K12.




  
PubMed:
        3049588


MedLine:
        




    
Source:
J Biol Chem. 1988 Oct 15;263(29):14769-75.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3049588

















    ReferenceID:34399




  
Author/Investigator(s):
        Sung YC, Anderson PM, Fuchs JA.





  
Title:
        Characterization of high-level expression and sequencing of the Escherichia coli K-12 cynS gene encoding cyanase.




  
PubMed:
        2822670


MedLine:
        




    
Source:
J Bacteriol. 1987 Nov;169(11):5224-30.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2822670









           
Homologs By Global Alignment 

           

       



     
Gene ID:5877
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7929
                           PA2052_tr
                           translation of PA2052
                           232
                           34.91
                           38.79
                           130
                           329.0
     

     
     
197904
                           gb|AAG05440.1|AE004631_9
                           (AE004631) cyanate lyase [Pseudomonas aeruginosa PAO1]
                           232
                           34.91
                           38.79
                           130
                           329.0
     

     






      

          
GC ORFID: 48879How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1566168Stop: 1565632

          
Length: 537


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2052 translation of PA2052Homolog Bit Score 140.0

          
Other Homologs:  t_PA2052 translation of PA2052 (BLASTP 140)

          
GC ORF Sequence

           
ATGCAaCACAGCCAAGTGTCCCCCaaCGCGCGCCAGCAACTGGCCGAGACCGTgGTcctgaaCaAGGCCCGC 
CTGGGCctgtcctggcaGgatctgGCCGACGGCACCGgtatcgcccTgacattagtcaccgccgccatgttc 
ggccagcatgccctgccagaggcggcggcgcgcaaggtcgccgcccaactcggcatggacgacgacgCGGtg 
CtcctgcttgcaaAGCATCCCGCTGcGcggCAGCATTCCCGGCGGCATTCCCAGCGACCCGACCATCTACCG 
CTTCTACGAGATGCTGCAAGTCTACGGCAGCACCCTGAAGGCACTGGTCCACGAACAGTTCGGCGACGGCAT 
CATCAGCGCGATCAACTTCAAGCTGGACATCAAGAAGGTCGAGGACCCGGAAGGCGGCTCGCGGGCGGTGAT 
CACCCTCGACGGCAAGTACCTGCCGACCAAACCGTTCTGAAGCGTCGCGCCGCCCGGCTCGCCGCCGGGCGC 
GCGCCTCAGCGGCTGGCGATGCTGACCCAGTAG