ViewGene

Locus Name:
GeneID:
Location:

GeneID:5872
TrivialName: PA14_38100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38100
PAO1 Ortholog Locus:
Sequence Length:1512
Protein Length:503
Start: 3398720
Stop: 3400231
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK23765.1| (AE005853) hypothetical protein [Caulobacter crescentus CB15]
Identities = 114/425 (26%), Positives = 143/425 (33%), Gaps = 95/425 (22%)
Sequence:
ATGCAGGGTGCTGGCGCGGAGACTGGCGTCGGGCAAGGAAGGAGACGACATGCGGCAACTCGGGAAGGACGG
GCGAACATTAGGCCGCAGCGCGGCGCACAGGTCAAAGCGCGCCGGAGCGAAACGAAGAAACCGCCCGAGGGC
GGTTTCTTCCGTGATCCAGGGATCGAATCAGGCGGCGCTCGCCTTGCGCTCCTCCGCCAGGCAGGCGGCGGC
GGTGAACAGCACGTCGGTCGAGGAGTTCAGCGCCGTCTCCGCGGAGTCCTGGAGGATCGCGATGATGAAGCC
TACCGCTACCACCTGCATCGCCACCTCGCTGGGAATCCCGAACAGGCTGCAGGCCAGCGGGATCAACAGCAG
CGAGCCGCCGGCCACGCCGGATGCGCCGCAGGCGCAGACCGACGCCACCACGCTGAGCAGGATCGCGGTCGG
TACGTCCACGGCGATGCCCAGGGTATGCACCGCTGCCAGGGTCAGCACGGTGATGGTGATCGCTGCGCCGGC
CATGTTGATGGTCGCGCCCAGCGGGATCGATACCGAATAGGTGTCTTCGTGCAGGCCCAGGCGCTCGCAGAG
CTGCAGGTTGACCGGGATATTGGCTGCCGAGCTGCGGGTGAAGAAGGCGGTCATGCCGCTTTCGCGCAGGCA
GGTCAGCACCAGCGGATAGGGATTGCGGCGGATCTTCAGGAACACGATCAGCGGGTTGACCACGAAGGCCAC
GAACAGCATGCAGCCGAGCAACACCACCAGCAGGTGGGCATAGCCTTTCAGGGCCTCGACGCCGGACTCGGC
GAAGGTCGAGGCGACCAGGCCGAAGATGCCCAGCGGGGCGAAGCGGATCACCACCTTGACGATCAGCGAGAC
GCCGTTGGACAGCTCGGAGAGCAGGTTGCGGGTGGTATCGCTGGCGTGGCGGAAGGCGATGCCGAGGCCGAT
GGCCCAGGCCAGGATGCCGATGAAGTTGGCCGAGATCAGGGCGTTGACCGGGTTGTCCACCACGCTCAGCAG
CAGGGACTGGAGCACCTCGGCGATGCCGCCCGGAGGCGACATCTCGCCCGGATGGCTGGCCAGCACCAGGCT
CGAGGGGAAGGCGAAGCTGGCGATCACCGCCACCACCGCGGCGCTGAAGGTGCCGACCAGGTACAGCAGCAG
GATCGGCCGGATATGGGTCTGCTGGCCTTGCCTGTGGTTGGCGATGGATGCCATCACCAGGACGAACACCAG
TACCGGCGCGACGGCCTTCAGCGCGGAAACGAAGACCTTGCCGATGAAGCCGACCTTGAGCGCGGCGGCCGG
GAAGAAGCTGGCGAGCAGCAGGCCGGCGATCAGGCCGACGATGATCTGGCCCACCAGGCTGGTACGCGTCAG
CAGATGAAGCAGGGGACGTTCAGGGTATGTCATGCAGATTTCTACTCTTATAGGTGTGTCGAAGGCCGGCCC
AGGCAGCTTCCATGCCGAACGACCCTGTGCCGTTCCGCCCCCGCGAAGGGATGGTTCGAGCGAGCCGGGTAG
Translation:
MQGAGAETGVGQGRRRHAATREGRANIRPQRGAQVKARRSETKKPPEGGFFRDPGIESGGARLALLRQAGGG
GEQHVGRGVQRRLRGVLEDRDDEAYRYHLHRHLAGNPEQAAGQRDQQQRAAGHAGCAAGADRRHHAEQDRGR
YVHGDAQGMHRCQGQHGDGDRCAGHVDGRAQRDRYRIGVFVQAQALAELQVDRDIGCRAAGEEGGHAAFAQA
GQHQRIGIAADLQEHDQRVDHEGHEQHAAEQHHQQVGIAFQGLDAGLGEGRGDQAEDAQRGEADHHLDDQRD
AVGQLGEQVAGGIAGVAEGDAEADGPGQDADEVGRDQGVDRVVHHAQQQGLEHLGDAARRRHLARMAGQHQA
RGEGEAGDHRHHRGAEGADQVQQQDRPDMGLLALPVVGDGCHHQDEHQYRRDGLQRGNEDLADEADLERGGR
EEAGEQQAGDQADDDLAHQAGTRQQMKQGTFRVCHADFYSYRCVEGRPRQLPCRTTLCRSAPAKGWFERAG*
AnnotationID:5873GeneID:5872
AnnotatorUID: diggins
Modification Date/Time: 2004-06-20 14:02:15
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:11657
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28864
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32658
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5872_cdd.html
URL:
GC ORFID: 48874How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1555190Stop: 1553679
Length: 1512
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCAGGGTGCTGGCGCGGAGACTGGCGTCGGGCAAGGAAGGAGACGACATGCGGCAACTCGGGAAGGACGG
GCGAACATTAGGCCGCAGCGCGGCGCACAGGTCAAAGCGCGCCGGAGCGAAACGAAGAAACCGCCCGAGGGC
GGTTTCTTCCGTGATCCAGGGATCGAATCAGGCGGCGCTCGCCTTGCGCTCCTCCGCCAGGCAGGCGGCGGC
GGTGAACAGCACGTCGGTCGAGGAGTTCAGCGCCGTCTCCGCGGAGTCCTGGAGGATCGCGATGATGAAGCC
TACCGCTACCACCTGCATCGCCACCTCGCTGGGAATCCCGAACAGGCTGCAGGCCAGCGGGATCAACAGCAG
CGAGCCGCCGGCCACGCCGGATGCGCCGCAGGCGCAGACCGACGCCACCACGCTGAGCAGGATCGCGGTCGG
TACGTCCACGGCGATGCCCAGGGTATGCACCGCTGCCAGGGTCAGCACGGTGATGGTGATCGCTGCGCCGGC
CATGTTGATGGTCGCGCCCAGCGGGATCGATACCGAATAGGTGTCTTCGTGCAGGCCCAGGCGCTCGCAGAG
CTGCAGGTTGACCGGGATATTGGCTGCCGAGCTGCGGGTGAAGAAGGCGGTCATGCCGCTTTCGCGCAGGCA
GGTCAGCACCAGCGGATAGGGATTGCGGCGGATCTTCAGGAACACGATCAGCGGGTTGACCACGAAGGCCAC
GAACAGCATGCAGCCGAGCAACACCACCAGCAGGTGGGCATAGCCTTTCAGGGCCTCGACGCCGGACTCGGC
GAAGGTCGAGGCGACCAGGCCGAAGATGCCCAGCGGGGCGAAGCGGATCACCACCTTGACGATCAGCGAGAC
GCCGTTGGACAGCTCGGAGAGCAGGTTGCGGGTGGTATCGCTGGCGTGGCGGAAGGCGATGCCGAGGCCGAT
GGCCCAGGCCAGGATGCCGATGAAGTTGGCCGAGATCAGGGCGTTGACCGGGTTGTCCACCACGCTCAGCAG
CAGGGACTGGAGCACCTCGGCGATGCCGCCCGGAGGCGACATCTCGCCCGGATGGCTGGCCAGCACCAGGCT
CGAGGGGAAGGCGAAGCTGGCGATCACCGCCACCACCGCGGCGCTGAAGGTGCCGACCAGGTACAGCAGCAG
GATCGGCCGGATATGGGTCTGCTGGCCTTGCCTGTGGTTGGCGATGGATGCCATCACCAGGACGAACACCAG
TACCGGCGCGACGGCCTTCAGCGCGGAAACGAAGACCTTGCCGATGAAGCCGACCTTGAGCGCGGCGGCCGG
GAAGAAGCTGGCGAGCAGCAGGCCGGCGATCAGGCCGACGATGATCTGGCCCACCAGGCTGGTACGCGTCAG
CAGATGAAGCAGGGGACGTTCAGGGTATGTCATGCAGATTTCTACTCTTATAGGTGTGTCGAAGGCCGGCCC
AGGCAGCTTCCATGCCGAACGACCCTGTGCCGTTCCGCCCCCGCGAAGGGATGGTTCGAGCGAGCCGGGTAG