ViewGene
Locus Name:
GeneID:
Location:

GeneID:5869
TrivialName: PA14_38230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38230
PAO1 Ortholog Locus:
Sequence Length:945
Protein Length:314
Start: 3410440
Stop: 3411384
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK22533.1| (AE005728) hypothetical protein [Caulobacter crescentus CB15]
Identities = 52/180 (28%), Positives = 75/180 (41%), Gaps = 32/180 (17%)
Sequence:
ATGACGCTTGTCGATACCGCGCTCCTGCACCAGGTAGCGCCGGATCGCCATCACCGCCGCCGACTCGCCGGC
GACCCAGGCGTAGAAACTGCCGCTCTCGGGGCTCGCCAGTTCCCAGAGGATCTCCTCGTCGATATCGATGTC
CTCCAGCTCctGGGCCGCACCACCCGCCACCTCGCGCTCCGGCAGCCGCGCCTGGCGCGCCGCCTCGATCAT
CCGCTCGCCGTTGCGCGAATGGATGCCGGCCTGGTGGCGCGGCAGCCAGTGCAGGCGCGCACCGGGAATCGC
CGGCAGGTCGAGGATATCGGCTTCTCCCGGCACTTCGAGAAAGGCCTCGACCACCGGCGGCTCGGCTTCGCC
GGCCAGCTCCTCGAGAATTCCCGCCACCGCGGGCAAGGCGGTTTCGTCGGCGATCAGCAGGATATGGCGGAC
GCCAGCCGGCGGCTTCCATTCGTAGCCGCCGGGGTCATCGCCGTATTGCCGGTTGGGCGCGGCCAGTTGCAG
GCGGTCGCCGATCCGCGCGTGGGTCGCCCAGGCCGAGGCCGGGCCGTTCTCGCCGTGGAGGACGAACTCCAC
GTCGACCTCCTCCTGCTCGGCGCGCAGCGCACGGATGGTGTAGGTACGCATCGGCGGCCGGCGAGCCGGCTC
GACGCTGCGATAGGCCTGGTACCACTCGCTGCCACCGGGCAGGCTGGGCGGCTGGCCGCTGGCATCGGGGAA
GAAGATCTTGATCCGCTGGTCGGCGGCCAGGGTCTTCATCTCGGCGACCTCCGGGCCGCCGAAGACGAAGCG
GGTCAGCGCCGGGCTGAGTTGCTCGCGGCGCTTGAGTTCGACATTGAACAGACGATAGGCGGGTTGCGACAT
GACGATGGTCTCCTGGTGACCGGCGCCCAGCGGCGCCGGCGGATGCATGCATCAGGCAACTCTAGCAAACAA
TGCGAATGA
Translation:
MTLVDTALLHQVAPDRHHRRRLAGDPGVETAALGARQFPEDLLVDIDVLQLLGRTTRHLALRQPRLARRLDH
PLAVARMDAGLVARQPVQARTGNRRQVEDIGFSRHFEKGLDHRRLGFAGQLLENSRHRGQGGFVGDQQDMAD
ASRRLPFVAAGVIAVLPVGRGQLQAVADPRVGRPGRGRAVLAVEDELHVDLLLLGAQRTDGVGTHRRPASRL
DAAIGLVPLAATGQAGRLAAGIGEEDLDPLVGGQGLHLGDLRAAEDEAGQRRAELLAALEFDIEQTIGGLRH
DDGLLVTGAQRRRRMHASGNSSKQCE*
AnnotationID:5870GeneID:5869
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 21:09:09
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:11651




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28858




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48871How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1543470Stop: 1542526

          
Length: 945


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGACGCTTGTCGATACCGCGCTCCTGCACCAGGTAGCGCCGGATCGCCATCACCGCCGCCGACTCGCCGGC 
GACCCAGGCGTAGAAACTGCCGCTCTCGGGGCTCGCCAGTTCCCAGAGGATCTCCTCGTCGATATCGATGTC 
CTCCAGCTCctGGGCCGCACCACCCGCCACCTCGCGCTCCGGCAGCCGCGCCTGGCGCGCCGCCTCGATCAT 
CCGCTCGCCGTTGCGCGAATGGATGCCGGCCTGGTGGCGCGGCAGCCAGTGCAGGCGCGCACCGGGAATCGC 
CGGCAGGTCGAGGATATCGGCTTCTCCCGGCACTTCGAGAAAGGCCTCGACCACCGGCGGCTCGGCTTCGCC 
GGCCAGCTCCTCGAGAATTCCCGCCACCGCGGGCAAGGCGGTTTCGTCGGCGATCAGCAGGATATGGCGGAC 
GCCAGCCGGCGGCTTCCATTCGTAGCCGCCGGGGTCATCGCCGTATTGCCGGTTGGGCGCGGCCAGTTGCAG 
GCGGTCGCCGATCCGCGCGTGGGTCGCCCAGGCCGAGGCCGGGCCGTTCTCGCCGTGGAGGACGAACTCCAC 
GTCGACCTCCTCCTGCTCGGCGCGCAGCGCACGGATGGTGTAGGTACGCATCGGCGGCCGGCGAGCCGGCTC 
GACGCTGCGATAGGCCTGGTACCACTCGCTGCCACCGGGCAGGCTGGGCGGCTGGCCGCTGGCATCGGGGAA 
GAAGATCTTGATCCGCTGGTCGGCGGCCAGGGTCTTCATCTCGGCGACCTCCGGGCCGCCGAAGACGAAGCG 
GGTCAGCGCCGGGCTGAGTTGCTCGCGGCGCTTGAGTTCGACATTGAACAGACGATAGGCGGGTTGCGACAT 
GACGATGGTCTCCTGGTGACCGGCGCCCAGCGGCGCCGGCGGATGCATGCATCAGGCAACTCTAGCAAACAA 
TGCGAATGA