ViewGene

Locus Name:
GeneID:
Location:

GeneID:5863
TrivialName: PA14_38540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38540
PAO1 Ortholog Locus:
Sequence Length:2169
Protein Length:722
Start: 3439809
Stop: 3437641
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAB77348.1| (AL939119) hypothetical protein [Streptomyces coelicolor A3(2)]
Identities = 76/302 (25%), Positives = 114/302 (37%), Gaps = 45/302 (14%)
Sequence:
GTGGTTGAGGCCGAGGAGCAGGGTGAACAGCGCGGCGCCGGCGAGAATCGCCGCCAGCAGGCGGACCTTGCT
GCGCAGGCGGTCGGCGAGCCAGGCCAGGAGCATCGCGCCGAGGGTGCCGGCGAAGAGGAACATCGAGGTCGC
CAGGTTCGCCGCATTGCGTGTCAGGCCGCTTTCCTGGAGCAGCGAGGGCAGCCAGCTGACCATGAAGTAGAG
CAGGATCAGGCTGACGAAGAAGGTCGCCCAGAGCAGCAGGGTCGGCCGCGCGTAACCGTGGCGGAACAGCTC
CAGCACGGTCAGGCTCGCCGCCGGCTCGGCGTCGGCCTGTGCCGGCGGCGGCTGCCAGCCCGGCGCCATACG
CTCGCTGAGCTGGCGCAGGCGGGCATAGGGCGGTGCGTCGCGGAGCAGGCGCGGCAGCGACTCCGGGAGGAA
CAGGAGGAGGAAGGGGAACAGCAGCAACGGGGTGAcGCcgcCGGCGAGGAACACCGCCTGCCAGCCGAAGCC
GTCCATGAAGGCGGCGGCGACGAAACCGCCGGCGGCGCCGCCGAAGGAGAAACCGCAGGCCGCCAGGGTGAC
CATCAGGGTACGCAGGCGCGGTGGCGAATACTCGGCCATCAGCGCCATGGCGCTGGGCATCGCCCCGCCCAT
TCCGATGCCGCAGACGAAGCGCGCCAGCATCAGGTTTTCCAGGGAACCGGCGAAGACCATCAGGACGGTCAG
GCTGGCGTAGATCAGCACGCAGCAGAGCAGCACCCGGCGGATGCCGAAGCGGTCCGCCAGCGGCGTCACCAG
CAGCGAACCGACGGTCAGGCCGAACAGGTTGGCGCTGAACACCGGGCCGAACGCGGCCTTGTCCAGGCCCCA
TTCCTGGGCCAGGGTCGGCACCACGTAGCCGAGCACCTGGGCATCGTAGCCATCGGTGACCAGCAACAGGGC
GAGGAGCAGCAGCAACAGCCACTGGTAGCGGGACACGGGGCGCGCGTCGAGCGCCGCGCGAAAGCTGGCGAT
CTGGTTGTGCATCGCAAGGTACCTGAGGTTCTTATTGGTGATGGGGCGTCCGGCGGACGCCCCCCTTTATCT
TCAGGAGCGGGACTCTGCGGTCCCTCAGGCGGCCGGGGTGTCCGGCTGGTTGGCCGGATGGGCCTGGCGGAA
CGCCGGATGGGCGGCGGCCAGGTCGGCGACCCGGCGGATCCGTGGCCAGGCGTCCAGCGCCACGCCGAAGCG
CTCGGCGGCGTAGAGCTGCGGGACCAGGTAGACGTCGGCCAGGCCTGGCCGGTCGCCGAAGCACCAACCCTG
GTCGCCGATCAGTTGCTCGACGGCGGCGAGACCCTGGCCGACCCAGTGGCCGATCCACTGCCGGACCTGCTC
TTCGTCGTGTCCCCACTGGCGCAGCAGGTTGAGCACGCTGGCGTTGTGCAACGGGTGGATGTCGCAGCCGAC
CAGCGCCGCGACTCCGCGCTCGTGGGCGCGGCGCAGCGGATCGCTGGAGAGCAGGGCGGGGTGCGGGTAGCG
CTCCTCGAGGTACTCGATGATCGCCGGCGACTGGATCAGCAGCTCGCCCTCGTCGACCTGCAGGGCCGGTAC
GCGGCCCTGCGGGTTGAGCGCCAGGTAGGCGGGTTGGCGGTGTTCGCCGCCGTCGCGGACCAGGTTGACCGG
CAGCGACTGGTAGTCCAGCCCCTTCAGCGCCAGGGCGATGCGCACCCGGTAGGAGGAGGTGGAACGGTAGTA
GGTATAGAGCTTCATCCGCGCGCCCCCGGATGGGCCGCGAGCACTTTGCCGCGACATTCGCCGAAACCGATC
GAGACGTGTCCCTCGCGCTTGCAGCGGGCGCGGAGGATGACCTCGTCGCCGTCCTCGAGGAAGCGCCGGGTC
TCGCCGGAGGCCAGTTGCACCGGCTGCTTGCCGCCAGCGGTGATCTCCAGCAGCGAGCCGAACTGGCCGGGC
TCGGCGCCGGACAGGGTGCCGGAGCCGAACAGGTCGCCGGGCTGCAACTGGCAGCCATTGACGCTGTGGTGG
GCGACCATCTGCGCCACCGTCCAGTACATGCTCAGGCTGTTGCTCAGGGTCAGGCGCTGCGGCGGCAGGCCT
TTCTCGCGCAGGCCCTCGGTGAGCAGCAGGACCTCCAGCTCGATGTCGAAGGCGCCGTGGGCCTGGTCGTTG
TCGTCGTAA
Translation:
MVEAEEQGEQRGAGENRRQQADLAAQAVGEPGQEHRAEGAGEEEHRGRQVRRIACQAAFLEQRGQPADHEVE
QDQADEEGRPEQQGRPRVTVAEQLQHGQARRRLGVGLCRRRLPARRHTLAELAQAGIGRCVAEQARQRLREE
QEEEGEQQQRGDAAGEEHRLPAEAVHEGGGDETAGGAAEGETAGRQGDHQGTQARWRILGHQRHGAGHRPAH
SDAADEARQHQVFQGTGEDHQDGQAGVDQHAAEQHPADAEAVRQRRHQQRTDGQAEQVGAEHRAERGLVQAP
FLGQGRHHVAEHLGIVAIGDQQQGEEQQQQPLVAGHGARVERRAKAGDLVVHRKVPEVLIGDGASGGRPPLS
SGAGLCGPSGGRGVRLVGRMGLAERRMGGGQVGDPADPWPGVQRHAEALGGVELRDQVDVGQAWPVAEAPTL
VADQLLDGGETLADPVADPLPDLLFVVSPLAQQVEHAGVVQRVDVAADQRRDSALVGAAQRIAGEQGGVRVA
LLEVLDDRRRLDQQLALVDLQGRYAALRVERQVGGLAVFAAVADQVDRQRLVVQPLQRQGDAHPVGGGGTVV
GIELHPRAPGWAASTLPRHSPKPIETCPSRLQRARRMTSSPSSRKRRVSPEASCTGCLPPAVISSSEPNWPG
SAPDRVPEPNRSPGCNWQPLTLWWATICATVQYMLRLLLRVRRCGGRPFSRRPSVSSRTSSSMSKAPWAWSL
SS*
AnnotationID:5864GeneID:5863
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 18:06:54
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:15726
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28849
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48865How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1514102Stop: 1516270
Length: 2169
Start Codon: GTGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGTTGAGGCCGAGGAGCAGGGTGAACAGCGCGGCGCCGGCGAGAATCGCCGCCAGCAGGCGGACCTTGCT
GCGCAGGCGGTCGGCGAGCCAGGCCAGGAGCATCGCGCCGAGGGTGCCGGCGAAGAGGAACATCGAGGTCGC
CAGGTTCGCCGCATTGCGTGTCAGGCCGCTTTCCTGGAGCAGCGAGGGCAGCCAGCTGACCATGAAGTAGAG
CAGGATCAGGCTGACGAAGAAGGTCGCCCAGAGCAGCAGGGTCGGCCGCGCGTAACCGTGGCGGAACAGCTC
CAGCACGGTCAGGCTCGCCGCCGGCTCGGCGTCGGCCTGTGCCGGCGGCGGCTGCCAGCCCGGCGCCATACG
CTCGCTGAGCTGGCGCAGGCGGGCATAGGGCGGTGCGTCGCGGAGCAGGCGCGGCAGCGACTCCGGGAGGAA
CAGGAGGAGGAAGGGGAACAGCAGCAACGGGGTGAcGCcgcCGGCGAGGAACACCGCCTGCCAGCCGAAGCC
GTCCATGAAGGCGGCGGCGACGAAACCGCCGGCGGCGCCGCCGAAGGAGAAACCGCAGGCCGCCAGGGTGAC
CATCAGGGTACGCAGGCGCGGTGGCGAATACTCGGCCATCAGCGCCATGGCGCTGGGCATCGCCCCGCCCAT
TCCGATGCCGCAGACGAAGCGCGCCAGCATCAGGTTTTCCAGGGAACCGGCGAAGACCATCAGGACGGTCAG
GCTGGCGTAGATCAGCACGCAGCAGAGCAGCACCCGGCGGATGCCGAAGCGGTCCGCCAGCGGCGTCACCAG
CAGCGAACCGACGGTCAGGCCGAACAGGTTGGCGCTGAACACCGGGCCGAACGCGGCCTTGTCCAGGCCCCA
TTCCTGGGCCAGGGTCGGCACCACGTAGCCGAGCACCTGGGCATCGTAGCCATCGGTGACCAGCAACAGGGC
GAGGAGCAGCAGCAACAGCCACTGGTAGCGGGACACGGGGCGCGCGTCGAGCGCCGCGCGAAAGCTGGCGAT
CTGGTTGTGCATCGCAAGGTACCTGAGGTTCTTATTGGTGATGGGGCGTCCGGCGGACGCCCCCCTTTATCT
TCAGGAGCGGGACTCTGCGGTCCCTCAGGCGGCCGGGGTGTCCGGCTGGTTGGCCGGATGGGCCTGGCGGAA
CGCCGGATGGGCGGCGGCCAGGTCGGCGACCCGGCGGATCCGTGGCCAGGCGTCCAGCGCCACGCCGAAGCG
CTCGGCGGCGTAGAGCTGCGGGACCAGGTAGACGTCGGCCAGGCCTGGCCGGTCGCCGAAGCACCAACCCTG
GTCGCCGATCAGTTGCTCGACGGCGGCGAGACCCTGGCCGACCCAGTGGCCGATCCACTGCCGGACCTGCTC
TTCGTCGTGTCCCCACTGGCGCAGCAGGTTGAGCACGCTGGCGTTGTGCAACGGGTGGATGTCGCAGCCGAC
CAGCGCCGCGACTCCGCGCTCGTGGGCGCGGCGCAGCGGATCGCTGGAGAGCAGGGCGGGGTGCGGGTAGCG
CTCCTCGAGGTACTCGATGATCGCCGGCGACTGGATCAGCAGCTCGCCCTCGTCGACCTGCAGGGCCGGTAC
GCGGCCCTGCGGGTTGAGCGCCAGGTAGGCGGGTTGGCGGTGTTCGCCGCCGTCGCGGACCAGGTTGACCGG
CAGCGACTGGTAGTCCAGCCCCTTCAGCGCCAGGGCGATGCGCACCCGGTAGGAGGAGGTGGAACGGTAGTA
GGTATAGAGCTTCATCCGCGCGCCCCCGGATGGGCCGCGAGCACTTTGCCGCGACATTCGCCGAAACCGATC
GAGACGTGTCCCTCGCGCTTGCAGCGGGCGCGGAGGATGACCTCGTCGCCGTCCTCGAGGAAGCGCCGGGTC
TCGCCGGAGGCCAGTTGCACCGGCTGCTTGCCGCCAGCGGTGATCTCCAGCAGCGAGCCGAACTGGCCGGGC
TCGGCGCCGGACAGGGTGCCGGAGCCGAACAGGTCGCCGGGCTGCAACTGGCAGCCATTGACGCTGTGGTGG
GCGACCATCTGCGCCACCGTCCAGTACATGCTCAGGCTGTTGCTCAGGGTCAGGCGCTGCGGCGGCAGGCCT
TTCTCGCGCAGGCCCTCGGTGAGCAGCAGGACCTCCAGCTCGATGTCGAAGGCGCCGTGGGCCTGGTCGTTG
TCGTCGTAA