ViewGene

Locus Name:
GeneID:
Location:

GeneID: 5861

TrivialName: PA14_38620

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_38620

PAO1 Ortholog Locus:

Sequence Length: 1623

Protein Length: 540

Start: 3445779

Stop: 3447401

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG30261.1|AF307334_7 (AF307334) unknown [Ectothiorhodospira shaposhnikovii] Identities = 146/326 (44%), Positives = 183/326 (56%)

Sequence:

GTGTGCTACGGCTCCCTGGGCACCCGGCCGTCCCGAGGGGCGGAACGGTACGGGGCCGGTCGGACGGTCAAG
GCCGTCCGCCGCTCGTTCCCTGGACACGAGCGCGCCATGCCCCCGCGAAAGGACATGGCGCGATCACGCCGC
GAGCGGCAGGTCGATGGATCAGTCGCGGGCCAGGGTCAGGGCGACGCCCTGCCCGCCGCCGATGCACAGGGT
GGCGAGGCCCTTCTTCGCGTCGCGACGGATCATCTCGTGCAGCAGGGTCACCAGCACCCGGCAGCCGGACGC
GCCGATCGGGTGGCCAAGGGCGATGGCGCCACCGTTGACGTTGACCCTGGCGGCATCCCAGCCCAGCTCCCG
GCCCACCGCCAGGGACTGCGCGGAGAAGGCCTCGTTGGCCTCGATCAGGTCCAGTTGCTCCAGGCTCCAGCC
GGCCTTGTCGAGCGCGCGACGGGTGGCGGAGACCGGGCCGATGCCCATGATCGCCGGGTCGACCCCGGCGCT
GGCGTAGCTGGCGATCCGCGCCAGCACCGGCAGGCCCAGGGCCTTGGCCTTGGCTGCGCTCATCAGCAATAC
CGCGGCGGCGCCGTCGTTGAGGCTGGAGGCGTTGCCGGCGGTGACGCTGCCGTCCTTCCTGAAGGCCGGCTT
GAGCTTGGCCAGGGCCTCGACGGTGGTGCCGGCGCGCGGCTGCTCGTCGGTATCGAAGCTCAGCGGCTCGCC
CTTGCGCTGCGGGACCTGGATCGGCGTGATCTCGTCGCGGAAGCGCCCGCCCTCGATGGCGGCGATGGCCTT
CTGCTGCGAAGCGGCGGCGAAGGCGTCCTGCTCCTCGCGGGTCAGGCCGTACTTCTCCGCCAGGTTCTCGGC
GGTGATGCCCATGTGGTAGTCGTTGAAGGCGTCCCACAGGCCGTCCTCGATCATGCTGTCGACCAGCTTCGC
ATGGCCCATGCGCAGGCCGGTGCGGGCGCCGGGCATGACGTAGGGCGCCAGGCTCATGTTCTCCTGGCCGCC
GGCGACGATCACCTCGGCGTCGCCGCAGCGGATCGCCTGGGCGCCCAGGTGCAGGGCCTTGAGGCCGGAGCC
GCAGACCTTGTTCAGGGTCATGGCCGGCACGCCGACCGGCAGGCCGGCCTTGATCGCCGCCTGGCGCGCCGG
GTTCTGCCCGGACCCGGCGGTGAGCACCTGGCCGAGGATCACTTCGTCGACCTGGCCGGCATCGAGACCGGT
CTGTTCGAGCAGGCGGCGGATCACCGCGGCGCCCAGCTCGGGGGCGGGAATGCCGGCCAGCGAGCCCTGGAA
GCTGCCGACGGCGGTACGGGTAGCGGCGACGATGACGACGTCTTGCATGGATGGTTCTCCTGGATTCGCCCG
TGGCCGGGCCGAATCGCTGCGGGTGGACGTAGGCGGTGCGACAGGCTCCTATCCTACGCCCTCTGGAAAGGA
CGGTCCGCGCGGCCGGCGCCTTGCGTGGAGGCGCCGGCCGCGCGGGCCGCGATTCAGAAACTCATTTCCGGC
ACGTGCTCGGGGACGATCAGCTTGCCGGCGGTCTTCGCCACGATCTCCTCGACGCTGACCCCGGGGGCGCGC
TCGCGGAGGATGAAGGCGCCGTCCTCGATCTCCAGGTAG

Translation:

MCYGSLGTRPSRGAERYGAGRTVKAVRRSFPGHERAMPPRKDMARSRRERQVDGSVAGQGQGDALPAADAQG
GEALLRVATDHLVQQGHQHPAAGRADRVAKGDGATVDVDPGGIPAQLPAHRQGLRGEGLVGLDQVQLLQAPA
GLVERATGGGDRADAHDRRVDPGAGVAGDPRQHRQAQGLGLGCAHQQYRGGAVVEAGGVAGGDAAVLPEGRL
ELGQGLDGGAGARLLVGIEAQRLALALRDLDRRDLVAEAPALDGGDGLLLRSGGEGVLLLAGQAVLLRQVLG
GDAHVVVVEGVPQAVLDHAVDQLRMAHAQAGAGAGHDVGRQAHVLLAAGDDHLGVAAADRLGAQVQGLEAGA
ADLVQGHGRHADRQAGLDRRLARRVLPGPGGEHLAEDHFVDLAGIETGLFEQAADHRGAQLGGGNAGQRALE
AADGGTGSGDDDDVLHGWFSWIRPWPGRIAAGGRRRCDRLLSYALWKGRSARPAPCVEAPAARAAIQKLISG
TCSGTISLPAVFATISSTLTPGARSRRMKAPSSISR*

AnnotationID:5862 GeneID:5861

AnnotatorUID: diggins

Modification Date/Time: 2005-03-02 18:06:06

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:15724

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:28845

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:5861

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

197815 gb|AAG30261.1|AF307334_7 (AF307334) unknown [Ectothiorhodospira shaposhnikovii] 540 27.03 33.88 213 651.0

GC ORFID: `48863`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `1508132`	Stop: `1506510`
Length: `1623`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGTGCTACGGCTCCCTGGGCACCCGGCCGTCCCGAGGGGCGGAACGGTACGGGGCCGGTCGGACGGTCAAG GCCGTCCGCCGCTCGTTCCCTGGACACGAGCGCGCCATGCCCCCGCGAAAGGACATGGCGCGATCACGCCGC GAGCGGCAGGTCGATGGATCAGTCGCGGGCCAGGGTCAGGGCGACGCCCTGCCCGCCGCCGATGCACAGGGT GGCGAGGCCCTTCTTCGCGTCGCGACGGATCATCTCGTGCAGCAGGGTCACCAGCACCCGGCAGCCGGACGC GCCGATCGGGTGGCCAAGGGCGATGGCGCCACCGTTGACGTTGACCCTGGCGGCATCCCAGCCCAGCTCCCG GCCCACCGCCAGGGACTGCGCGGAGAAGGCCTCGTTGGCCTCGATCAGGTCCAGTTGCTCCAGGCTCCAGCC GGCCTTGTCGAGCGCGCGACGGGTGGCGGAGACCGGGCCGATGCCCATGATCGCCGGGTCGACCCCGGCGCT GGCGTAGCTGGCGATCCGCGCCAGCACCGGCAGGCCCAGGGCCTTGGCCTTGGCTGCGCTCATCAGCAATAC CGCGGCGGCGCCGTCGTTGAGGCTGGAGGCGTTGCCGGCGGTGACGCTGCCGTCCTTCCTGAAGGCCGGCTT GAGCTTGGCCAGGGCCTCGACGGTGGTGCCGGCGCGCGGCTGCTCGTCGGTATCGAAGCTCAGCGGCTCGCC CTTGCGCTGCGGGACCTGGATCGGCGTGATCTCGTCGCGGAAGCGCCCGCCCTCGATGGCGGCGATGGCCTT CTGCTGCGAAGCGGCGGCGAAGGCGTCCTGCTCCTCGCGGGTCAGGCCGTACTTCTCCGCCAGGTTCTCGGC GGTGATGCCCATGTGGTAGTCGTTGAAGGCGTCCCACAGGCCGTCCTCGATCATGCTGTCGACCAGCTTCGC ATGGCCCATGCGCAGGCCGGTGCGGGCGCCGGGCATGACGTAGGGCGCCAGGCTCATGTTCTCCTGGCCGCC GGCGACGATCACCTCGGCGTCGCCGCAGCGGATCGCCTGGGCGCCCAGGTGCAGGGCCTTGAGGCCGGAGCC GCAGACCTTGTTCAGGGTCATGGCCGGCACGCCGACCGGCAGGCCGGCCTTGATCGCCGCCTGGCGCGCCGG GTTCTGCCCGGACCCGGCGGTGAGCACCTGGCCGAGGATCACTTCGTCGACCTGGCCGGCATCGAGACCGGT CTGTTCGAGCAGGCGGCGGATCACCGCGGCGCCCAGCTCGGGGGCGGGAATGCCGGCCAGCGAGCCCTGGAA GCTGCCGACGGCGGTACGGGTAGCGGCGACGATGACGACGTCTTGCATGGATGGTTCTCCTGGATTCGCCCG TGGCCGGGCCGAATCGCTGCGGGTGGACGTAGGCGGTGCGACAGGCTCCTATCCTACGCCCTCTGGAAAGGA CGGTCCGCGCGGCCGGCGCCTTGCGTGGAGGCGCCGGCCGCGCGGGCCGCGATTCAGAAACTCATTTCCGGC ACGTGCTCGGGGACGATCAGCTTGCCGGCGGTCTTCGCCACGATCTCCTCGACGCTGACCCCGGGGGCGCGC TCGCGGAGGATGAAGGCGCCGTCCTCGATCTCCAGGTAG